STRINGSTRING
AT1G22890 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G22890" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G22890Uncharacterized protein (73 aa)    
Predicted Functional Partners:
POD1
Uncharacterized protein; Probable component of the calreticulin 3 (CRT3) complex, acting probably as a co-chaperone involved in protein retention in the endoplasmic reticulum lumen. Required for micropylar pollen tube guidance. Plays an essential role in cell plate orientation or positioning in early embryo patterning (624 aa)
     
      0.916
SETH5
Transducin family protein / WD-40 repeat family protein (1913 aa)
     
      0.850
AT1G12470
Zinc ion binding (988 aa)
       
      0.840
VCL1
VACUOLELESS 1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles. Important for the function of both male and female gametophytes, but is not essential for the germination and development of pollen (858 aa)
       
      0.831
VPS11
Vacuolar protein sorting 11; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment (932 aa)
       
      0.831
VPS41
Vacuolar protein sorting 41; Required for vacuolar assembly and vacuolar traffic (980 aa)
       
      0.614
AT3G01350
Putative peptide/nitrate transporter (563 aa)
           
  0.602
AT1G72060
Serine-type endopeptidase inhibitor (81 aa)
     
        0.578
EMB2754
EMBRYO DEFECTIVE 2754 (1000 aa)
     
      0.573
AT1G22860
Vacuolar sorting protein 39 (961 aa)
     
      0.573
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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