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AT1G22970 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G22970" - Uncharacterized protein F19G10.8 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G22970Uncharacterized protein F19G10.8; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G71150.1); Has 134 Blast hits to 132 proteins in 48 species- Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 10; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source- NCBI BLink) (357 aa)    
Predicted Functional Partners:
AT2G16860
Uncharacterized protein At2g16860; GCIP-interacting family protein; Contains the following InterPro domains- mRNA splicing factor SYF2 (InterPro-IPR013260); Has 2586 Blast hits to 2013 proteins in 293 species- Archae - 27; Bacteria - 123; Metazoa - 700; Fungi - 265; Plants - 138; Viruses - 7; Other Eukaryotes - 1326 (source- NCBI BLink) (298 aa)
     
 
  0.650
AT5G22100
Probable RNA 3’-terminal phosphate cyclase-like protein; Does not have cyclase activity. Plays a role in 40S- ribosomal-subunit biogenesis in the early pre-rRNA processing steps at sites A0, A1 and A2 that are required for proper maturation of the 18S RNA (By similarity) (375 aa)
     
        0.592
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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