STRINGSTRING
GH9B6 protein (Arabidopsis thaliana) - STRING interaction network
"GH9B6" - Endoglucanase 4 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GH9B6Endoglucanase 4 (489 aa)    
Predicted Functional Partners:
RTFL5
ROTUNDIFOLIA like 5 (144 aa)
           
  0.638
AT3G49450
F-box protein (397 aa)
           
  0.638
PUM16
Pumilio 16; Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3’-UTR of target mRNAs (332 aa)
           
  0.637
PUM17
Pumilio 17 (304 aa)
           
  0.637
AT5G01990
Auxin efflux carrier family protein (431 aa)
           
  0.636
PUM15
Pumilio 15; Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3’-UTR of target mRNAs (477 aa)
           
  0.636
AT2G29060
Scarecrow-like protein 34; Probable transcription factor involved in plant development (694 aa)
           
  0.632
AT5G61530
Uncharacterized Rho GTPase-activating protein; Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state (376 aa)
           
  0.605
DAZ3
DUO1-activated zinc finger 3 (275 aa)
           
  0.603
AT1G63100
Scarecrow-like protein 28; Probable transcription factor involved in plant development (658 aa)
           
  0.603
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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