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GH9B6 protein (Arabidopsis thaliana) - STRING interaction network
"GH9B6" - Glycosyl hydrolase 9B6 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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GH9B6Glycosyl hydrolase 9B6 (GH9B6); Its function is described as hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; Involved in carbohydrate metabolic process; Located in endomembrane system; Expressed in sperm cell, male gametophyte, pollen tube; Expressed during L mature pollen stage, M germinated pollen stage; Contains the following InterPro domains- Six-hairpin glycosidase (InterPro-IPR012341), Glycoside hydrolase, family 9, active site (InterPro-IPR018221), Six-hairpin glycosidase-like (InterPro-IPR008928), Glycoside hydrolase, family 9 (InterPro-IPR001701); BES [...] (489 aa)    
Predicted Functional Partners:
AT1G06550
ATP-dependent caseinolytic (Clp) protease/crotonase family protein; Its function is described as 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; Involved in response to karrikin, fatty acid beta-oxidation; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Crotonase, core (InterPro-IPR001753); BEST Arabidopsis thaliana protein match is- beta-hydroxyisobutyryl-CoA hydrolase 1 (TAIR-AT5G65940.1); Has 26566 Blast hits to 26556 proteins in 2155 species- Archae - 406; Bacteria - [...] (387 aa)
           
  0.581
AT4G31810
ATP-dependent caseinolytic (Clp) protease/crotonase family protein; Its function is described as 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; Involved in fatty acid beta-oxidation, metabolic process; Located in mitochondrion; Expressed in 22 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- Crotonase, core (InterPro-IPR001753); BEST Arabidopsis thaliana protein match is- ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR-AT3G60510.1); Has 22679 Blast hits to 22670 proteins in 1880 species- Archae - 357 [...] (409 aa)
           
  0.569
AT3G60510
ATP-dependent caseinolytic (Clp) protease/crotonase family protein; Its function is described as catalytic activity; Involved in metabolic process; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Crotonase, core (InterPro-IPR001753); BEST Arabidopsis thaliana protein match is- ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR-AT4G31810.1); Belongs to the enoyl-CoA hydratase/isomerase family (426 aa)
           
  0.569
YUC2
Flavin-binding monooxygenase family protein; Involved in auxin biosynthesis. Converts the indole-3- pyruvic acid (IPA) produced by the TAA family to indole-3-acetic acid (IAA). Unable to use tryptamine (TAM) as substrate. Required for the formation of floral organs and vascular tissues. Belongs to the set of redundant YUCCA genes probably responsible for auxin biosynthesis in shoots (415 aa)
           
  0.548
EXPA17
Putative expansin-A17; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). Target of the transcriptional activator LBD18. Regulated by LBD18 to promote lateral root formation (255 aa)
           
  0.548
GRF4
Growth-regulating factor 4; Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (380 aa)
           
  0.457
At2g36400
Growth-regulating factor 3; Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium (398 aa)
           
  0.457
HR2
RPW8-like protein 2; Probable disease resistance (R) protein (205 aa)
           
  0.430
HR1
RPW8-like protein 1; Probable disease resistance (R) protein (189 aa)
           
  0.410
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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