Groups of genes that are frequently observed in each other's genomic neighborhood.
Co-purification, co-crystallization, Yeast2Hybrid, Genetic Interactions, etc ... as imported from primary sources.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Kelch repeat-containing F-box protein (394 aa)
Predicted Functional Partners:
F-box/kelch-repeat protein (409 aa)
F-box/kelch-repeat protein (354 aa)
F-box/kelch-repeat protein SKIP20; Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (418 aa)
Pectin lyase-like superfamily protein (455 aa)
Trehalose-6-phosphatase synthase S8 (856 aa)
Uncharacterized protein (294 aa)
Zinc finger CCCH domain-containing protein 23 (315 aa)
Chaperone protein dnaJ 8; Have a continuous role in plant development probably in the structural organization of compartments (163 aa)
CHY-type/CTCHY-type/RING-type Zinc finger protein (291 aa)
Uncharacterized protein (401 aa)
Your Current Organism:
NCBI taxonomy Id: 3702 Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress