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AT1G23410 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G23410" - 40S ribosomal protein S27a-1 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G2341040S ribosomal protein S27a-1; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked- Lys-11-linked is involved in ERA [...] (156 aa)    
Predicted Functional Partners:
RPS6A
Ribosomal protein S6; May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA (250 aa)
   
  0.990
AT3G10610
40S ribosomal protein S17-3 (140 aa)
   
  0.990
AT5G28060
40S ribosomal protein S24-2 (133 aa)
   
  0.990
AT5G15520
40S ribosomal protein S19-2 (143 aa)
     
  0.988
AT5G59240
40S ribosomal protein S8-2 (210 aa)
     
  0.988
AT3G04920
40S ribosomal protein S24-1 (133 aa)
   
  0.988
AT5G61170
40S ribosomal protein S19-3 (143 aa)
     
  0.986
AT3G47370
40S ribosomal protein S20-2 (122 aa)
     
  0.984
AT5G58420
40S ribosomal protein S4-3 (262 aa)
     
  0.982
EMB3010
Embryo defective 3010; May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA (249 aa)
   
  0.982
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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