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AT1G23580 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G23580" - Domain of unknown function DUF220 in Arabidopsis thaliana
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second shell of interactors
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proteins of unknown 3D structure
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some 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
protein homology
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Gene Fusion
AT1G23580Domain of unknown function DUF220; Contains the following InterPro domains- Protein of unknown function DUF220 (InterPro-IPR003863); BEST Arabidopsis thaliana protein match is- Domain of unknown function DUF220 (TAIR-AT1G23600.1); Has 137 Blast hits to 122 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (285 aa)    
Predicted Functional Partners:
GDSL-like Lipase/Acylhydrolase superfamily protein; Its function is described as lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; Involved in lipid metabolic process; Located in endomembrane system; Expressed in 8 plant structures; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Lipase, GDSL, active site (InterPro-IPR008265), Lipase, GDSL (InterPro-IPR001087); BEST Arabidopsis thaliana protein match is- GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR-AT1G20132.1); Has 3842 Bl [...] (402 aa)
Encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl (866 aa)
Leo1-like family protein; Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 ’Lys-4’ (H3K4me3). Involved in regulation of flowering time. Required for the expression of the flowering repressor and MADS box gene FLC. Involved in the control of seed dormancy and germination; Belongs to the LEO1 family (625 aa)
Ribosomal protein L13 family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L13 (InterPro-IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro-IPR005755); BEST Arabidopsis thaliana protein match is- Ribosomal protein L13 family protein (TAIR-AT3G07110.1); Has 2057 Blast hits to 2057 proteins in 651 [...] (206 aa)
Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth (425 aa)
Flowering time control protein FCA; Plays a major role in the promotion of the transition of the vegetative meristem to reproductive development. Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for RNA-mediated chromatin silencing of a range of loci in the genome. Cotranscriptionally recognizes aberrant RNA and marks it for silencing. Controls alternative cleavage and polyadenylation on pre-mRNAs and antisense RNAs. Acts redundantly with FPA to prevent the expression of distally polyadenylated an [...] (747 aa)
Putative disease resistance protein; Receptor like protein 34 (RLP34); Contains the following InterPro domains- Leucine-rich repeat, typical subtype (InterPro-IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro-IPR013210), Leucine-rich repeat (InterPro-IPR001611); BEST Arabidopsis thaliana protein match is- receptor like protein 53 (TAIR-AT5G27060.1); Has 142392 Blast hits to 33789 proteins in 1239 species- Archae - 73; Bacteria - 11207; Metazoa - 34063; Fungi - 1634; Plants - 83633; Viruses - 34; Other Eukaryotes - 11748 (source- NCBI BLink) (894 aa)
Polyadenylate-binding protein RBP47C; Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation (432 aa)
Probable sodium/metabolite cotransporter BASS6, chloroplastic; May function as sodium-coupled metabolite transporter across the chloroplast envelope (409 aa)
U11/U12 small nuclear ribonucleoprotein 65 kDa protein; Component of minor spliceosome required for U12-type intron splicing and alternative splicing of many introns. Binds specifically to U12 snRNA, which is necessary for branch-point site recognition. Required for normal plant development (442 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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