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AT1G23580 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G23580" - Domain of unknown function DUF220 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G23580Domain of unknown function DUF220; Contains the following InterPro domains- Protein of unknown function DUF220 (InterPro-IPR003863); BEST Arabidopsis thaliana protein match is- Domain of unknown function DUF220 (TAIR-AT1G23600.1); Has 137 Blast hits to 122 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (285 aa)    
Predicted Functional Partners:
AT1G20120
GDSL-like Lipase/Acylhydrolase superfamily protein; Its function is described as lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; Involved in lipid metabolic process; Located in endomembrane system; Expressed in 8 plant structures; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Lipase, GDSL, active site (InterPro-IPR008265), Lipase, GDSL (InterPro-IPR001087); BEST Arabidopsis thaliana protein match is- GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR-AT1G20132.1); Has 3842 Bl [...] (402 aa)
           
  0.890
HEN4
Encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl (866 aa)
           
  0.645
VIP4
Leo1-like family protein; Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 ’Lys-4’ (H3K4me3). Involved in regulation of flowering time. Required for the expression of the flowering repressor and MADS box gene FLC. Involved in the control of seed dormancy and germination; Belongs to the LEO1 family (625 aa)
           
  0.625
AT3G24830
Ribosomal protein L13 family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L13 (InterPro-IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro-IPR005755); BEST Arabidopsis thaliana protein match is- Ribosomal protein L13 family protein (TAIR-AT3G07110.1); Has 2057 Blast hits to 2057 proteins in 651 [...] (206 aa)
           
  0.567
SR45
Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth (425 aa)
           
  0.546
FCA
Flowering time control protein FCA; Plays a major role in the promotion of the transition of the vegetative meristem to reproductive development. Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for RNA-mediated chromatin silencing of a range of loci in the genome. Cotranscriptionally recognizes aberrant RNA and marks it for silencing. Controls alternative cleavage and polyadenylation on pre-mRNAs and antisense RNAs. Acts redundantly with FPA to prevent the expression of distally polyadenylated an [...] (747 aa)
           
  0.530
RLP34
Putative disease resistance protein; Receptor like protein 34 (RLP34); Contains the following InterPro domains- Leucine-rich repeat, typical subtype (InterPro-IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro-IPR013210), Leucine-rich repeat (InterPro-IPR001611); BEST Arabidopsis thaliana protein match is- receptor like protein 53 (TAIR-AT5G27060.1); Has 142392 Blast hits to 33789 proteins in 1239 species- Archae - 73; Bacteria - 11207; Metazoa - 34063; Fungi - 1634; Plants - 83633; Viruses - 34; Other Eukaryotes - 11748 (source- NCBI BLink) (894 aa)
           
  0.530
At1g47490
Polyadenylate-binding protein RBP47C; Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation (432 aa)
           
  0.530
AT4G22840
Probable sodium/metabolite cotransporter BASS6, chloroplastic; May function as sodium-coupled metabolite transporter across the chloroplast envelope (409 aa)
           
  0.527
AT1G09230
U11/U12 small nuclear ribonucleoprotein 65 kDa protein; Component of minor spliceosome required for U12-type intron splicing and alternative splicing of many introns. Binds specifically to U12 snRNA, which is necessary for branch-point site recognition. Required for normal plant development (442 aa)
           
  0.527
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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