• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G23590 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G23590" - Domain of unknown function DUF220 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G23590Domain of unknown function DUF220; Contains the following InterPro domains- Protein of unknown function DUF220 (InterPro-IPR003863); BEST Arabidopsis thaliana protein match is- Domain of unknown function DUF220 (TAIR-AT1G23600.1); Has 137 Blast hits to 124 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (217 aa)    
Predicted Functional Partners:
AT1G23240
Caleosin-related family protein; Probable calcium-binding peroxygenase. May be involved in pollination; Belongs to the caleosin family (210 aa)
     
        0.422
AT1G66850
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Its function is described as lipid binding; Involved in lipid transport; Located in endomembrane system; Expressed in 8 plant structures; Expressed during 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; Contains the following InterPro domains- Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro-IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro-IPR003612), Plant lipid transfer protein/hydrophobi [...] (102 aa)
     
        0.420
AT1G23670
Domain of unknown function (DUF220); Contains the following InterPro domains- Protein of unknown function DUF220 (InterPro-IPR003863); BEST Arabidopsis thaliana protein match is- Domain of unknown function (DUF220) (TAIR-AT1G23520.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (264 aa)
     
     
0.408
AT1G30350
Pectin lyase-like superfamily protein; Its function is described as lyase activity, pectate lyase activity; Involved in biological_process unknown; Located in endomembrane system; Expressed in petal, leaf whorl, sepal, flower; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold (InterPro-IPR012334); BEST Arabidopsis thaliana protein match is- Pectin lyase-like superfamil [...] (368 aa)
     
        0.406
AT1G23570
Domain of unknown function (DUF220); Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 6 plant structures; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Protein of unknown function DUF220 (InterPro-IPR003863); BEST Arabidopsis thaliana protein match is- Domain of unknown function DUF220 (TAIR-AT1G23580.1); Has 171 Blast hits to 155 proteins in 28 species- Archae - 0; Bacteria - 29; Metazoa - 2; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (263 aa)
     
     
0.406
GRP16
Encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12) (244 aa)
     
        0.403
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (13%) [HD]