STRINGSTRING
AT1G23880 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G23880" - NHL domain-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G23880NHL domain-containing protein (545 aa)    
Predicted Functional Partners:
AT5G19190
Uncharacterized protein (154 aa)
           
  0.553
AT4G30660
Low temperature and salt responsive protein family (74 aa)
           
  0.553
TPR4
Tetratricopeptide repeat 4 (310 aa)
           
  0.553
AT4G33120
S-adenosyl-L-methionine-dependent methyltransferase-like protein (355 aa)
           
  0.551
APRL7
APR-like 7 (289 aa)
     
   
  0.511
AT3G50520
Phosphoglycerate mutase; May play a role in carbohydrates metabolism (230 aa)
           
  0.489
AT2G30150
UDP-Glycosyltransferase superfamily protein (440 aa)
           
  0.489
AT4G26670
Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; Essential core component of the TIM22 complex, a complex that mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane (210 aa)
           
  0.480
AT5G37860
Heavy metal transport/detoxification superfamily protein (262 aa)
           
  0.470
CBSX3
CBS domain-containing protein (206 aa)
     
   
  0.460
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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