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AT1G23980 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G23980" - RING-H2 finger protein ATL47 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G23980RING-H2 finger protein ATL47 (369 aa)    
Predicted Functional Partners:
UBC37
Ubiquitin-conjugating enzyme 37; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins (409 aa)
       
 
  0.839
UBC29
Ubiquitin-conjugating enzyme 29; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins (148 aa)
       
 
  0.838
UBC27
Ubiquitin-conjugating enzyme 27 (203 aa)
     
 
  0.828
UBC31
Ubiquitin-conjugating enzyme 31; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins (154 aa)
       
 
  0.804
UBC22
Ubiquitin-conjugating enzyme 22; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins (251 aa)
       
 
  0.799
UBC30
Ubiquitin-conjugating enzyme 30; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins (148 aa)
       
 
  0.798
UBC17
Ubiquitin-conjugating enzyme; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins (161 aa)
       
 
  0.781
UBC36
Ubiquitin-conjugating enzyme 36 (162 aa)
       
 
  0.744
UBC28
Ubiquitin-conjugating enzyme 28 (190 aa)
       
 
  0.743
UBC11
Ubiquitin-conjugating enzyme 11; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Mediates the selective degradation of short-lived and abnormal proteins (148 aa)
       
 
  0.741
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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