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AT1G24090 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G24090" - RNase H family protein in Arabidopsis thaliana
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
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gene co-occurrence
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textmining
co-expression
protein homology
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AT1G24090RNase H family protein; Its function is described as ribonuclease H activity, nucleic acid binding; Involved in biological_process unknown; Expressed in 11 plant structures; Expressed during 6 growth stages; Contains the following InterPro domains- Ribosomal protein L9/RNase H1, N-terminal (InterPro-IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro-IPR012337), Ribonuclease H (InterPro-IPR002156); BEST Arabidopsis thaliana protein match is- RNase H family protein (TAIR-AT5G51080.2); Has 3412 Blast hits to 3412 proteins in 738 species- Archae - 71; Bacteria - 1533; M [...] (353 aa)    
Predicted Functional Partners:
AT3G47630
Translocator assembly/maintenance protein; Contains the following InterPro domains- Mitochondrial matrix Mmp37 (InterPro-IPR015222); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (332 aa)
           
  0.968
AT3G06620
PAS domain-containing protein tyrosine kinase family protein; Its function is described as protein serine/threonine/tyrosine kinase activity, kinase activity; Involved in signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; Expressed in 22 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- PAC motif (InterPro-IPR001610), Protein kinase, catalytic domain (InterPro-IPR000719), PAS fold (InterPro-IPR013767), PAS (InterPro-IPR000014), Serine-threonine/tyrosine-protein kinase (InterPro-IPR001245), Pro [...] (773 aa)
       
 
  0.839
WNK2
Serine/threonine-protein kinase WNK2; Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms (627 aa)
           
  0.808
AT1G47530
MATE efflux family protein; Its function is described as antiporter activity, drug transmembrane transporter activity, transporter activity; Involved in drug transmembrane transport, ripening, transmembrane transport; Located in plasma membrane, membrane; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Multi antimicrobial extrusion protein MatE (InterPro-IPR002528); BEST Arabidopsis thaliana protein match is- root hair specific 2 (TAIR-AT1G12950.1); Has 9964 Blast hits to 9893 proteins in 2013 species- Archae - 182; Bacteria [...] (484 aa)
           
  0.734
UPF3
Regulator of nonsense transcripts UPF3; Recruits UPF2 at the cytoplasmic side of the nuclear envelope and the subsequent formation of an UPF1-UPF2-UPF3 surveillance complex (including UPF1 bound to release factors at the stalled ribosome) is believed to activate NMD. Binds spliced mRNA upstream of exon-exon junctions (By similarity). Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons (premature termination codon PTC) by associating with the nuclear exon junction complex (EJC) and serving as link between the EJC core and NMD machinery. Eliminates the pro [...] (484 aa)
           
  0.698
AT2G25100
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Catalytic subunit of RNase HII, an endonuclease that specifically degrades the RNA of RNA-DNA hybrids. Participates in DNA replication, possibly by mediating the removal of lagging- strand Okazaki fragment RNA primers during DNA replication. Mediates the excision of single ribonucleotides from DNA-RNA duplexes (By similarity); Belongs to the RNase HII family. Eukaryotic subfamily (296 aa)
   
 
  0.679
CYP59
Peptidyl-prolyl cis-trans isomerase CYP59; Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis- trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles (506 aa)
         
  0.578
AT1G51310
transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases; Its function is described as tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, transferase activity; Involved in tRNA processing, RNA processing; Located in chloroplast, cytoplasm; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Rossmann-like alpha/beta/alpha sandwich fold (InterPro-IPR014729), tRNA-specific 2-thiouridylase (InterPro-IPR004506); Has 8544 Blast hits to 8538 proteins in 2600 species- Archae - 0; Bacteria - 5626; Me [...] (497 aa)
         
  0.575
THY-2
Bifunctional dihydrofolate reductase-thymidylate synthase 2; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism. Can play two different roles depending on the source of dihydrofolate- de novo synthesis of tetrahydrofolate or recycling of the dihydrofolate released as one of the end products of the TS catalyzed reaction. Catalyzes an essential reaction for de novo glycine and purine synthesis, DNA precursor synthesis, and for the conversion of dUMP to dTMP; In the C-terminal section; belongs to the thymidylate synthase family (565 aa)
   
   
  0.564
AT2G21550
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (492 aa)
   
   
  0.564
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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