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AT1G24200 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G24200" - Paired amphipathic helix repeat-containing protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G24200Paired amphipathic helix repeat-containing protein (196 aa)    
Predicted Functional Partners:
AT1G33910
Putative avirulence-responsive protein (301 aa)
     
   
  0.963
AT3G20360
TRAF-like family protein (363 aa)
     
   
  0.961
AT4G12230
alpha/beta-Hydrolases superfamily protein (392 aa)
           
  0.960
AT2G30670
Tropine dehydrogenase (262 aa)
           
  0.960
ELF6
EARLY FLOWERING 6; Acts probably as a histone ’Lys-4’ (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus (1340 aa)
     
  0.918
REF6
Relative of early flowering 6; Histone demethylase that demethylates ’Lys-27’ (H3K27me) of histone H3. Demethylates both tri- (H3K27me3) and di-methylated (H3K27me2) H3K27me. Demethylates also H3K4me3/2 and H3K36me3/2 in an in vitro assay. Involved in the transcriptional regulation of hundreds of genes regulating developmental patterning and responses to various stimuli. Involved in the regulation of flowering time by repressing FLOWERING LOCUS C (FLC) expression (1360 aa)
     
  0.918
AT4G37280
MRG family protein; Chromatin remodeling factor. Acts as a ’reader’ protein by binding to H3K36me3 and H3K36me3 to control histone H4 acetylation. Increases the transcriptional levels of the flowering time genes FLC and FT (PubMed-25183522, PubMed-25211338). Binds the chromatin at the FT promoter upon interaction with CO (Probable) (320 aa)
       
 
  0.897
AT1G02740
MRG family protein; Chromatin remodeling factor. Acts as a ’reader’ protein by binding to H3K4me3 and H3K36me3 to control histone H4 acetylation. Increases the transcriptional levels of the flowering time genes FLC and FT (PubMed-25183522, PubMed-25211338). Binds the chromatin at the FT promoter upon interaction with CO (PubMed-25211338) (327 aa)
       
 
  0.897
HAT3.1
Homeobox protein HAT3.1; Binds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab- E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif (723 aa)
       
 
  0.895
PRHA
Pathogenesis-related homeodomain protein; Specifically binds to the fungal elicitor-responsive DNA element, 5’-CTAATTGTTTA-3’, of the gene PR2 promoter (796 aa)
       
 
  0.893
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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