STRINGSTRING
AT1G25370 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G25370" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G25370Uncharacterized protein (263 aa)    
Predicted Functional Partners:
AT3G04600
tryptophanyl-tRNA synthetase (402 aa)
           
  0.958
AT3G04590
AT hook motif DNA-binding family protein; Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (411 aa)
           
  0.924
AT2G32000
DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Fin [...] (865 aa)
           
  0.864
AT5G35737
Uncharacterized protein (123 aa)
           
  0.862
AT4G25315
Expressed protein (127 aa)
           
  0.862
AT4G01000
Ubiquitin family protein (415 aa)
           
  0.862
UMAMIT40
Nodulin MtN21-like transporter family protein (382 aa)
           
  0.847
AAE18
Acyl-activating enzyme 18; May be involved in the peroxisomal activation of 2,4- dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth (727 aa)
           
  0.709
ACR8
ACT domain repeat 8; May bind amino acids (441 aa)
           
  0.679
AtCDC48B
Cell division cycle 48B; Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity) (815 aa)
           
  0.631
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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