• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
CRF12 protein (Arabidopsis thaliana) - STRING interaction network
"CRF12" - AP2 domain-containing transcription factor family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRF12AP2 domain-containing transcription factor family protein; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (287 aa)    
Predicted Functional Partners:
CPuORF53
Upstream open reading frames (uORFs) are small open reading frames found in the 5’ UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF53 represents a conserved upstream opening reading frame relative to major ORF AT1G68550.1 (87 aa)
           
  0.909
CPuORF54
Upstream open reading frames (uORFs) are small open reading frames found in the 5’ UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF54 represents a conserved upstream opening reading frame relative to major ORF AT1G25470.1 (90 aa)
           
  0.909
AT1G01250
Ethylene-responsive transcription factor ERF023; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (192 aa)
           
  0.768
AT1G77640
Ethylene-responsive transcription factor ERF013; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (244 aa)
           
  0.699
AT1G77200
Ethylene-responsive transcription factor ERF037; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (244 aa)
           
  0.667
AT1G36060
Ethylene-responsive transcription factor ERF055; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (314 aa)
           
  0.613
AT4G18450
Ethylene-responsive transcription factor ERF091; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (303 aa)
           
  0.591
BZIP53
Basic region/leucine zipper motif 53; Transcription activator that binds DNA to the C-box-like motif (5’-TGCTGACGTCA-3’), ABRE elements, G-box-like motif (5’- CCACGTGGCC-3’), DOF (5’-AAAG-3’), I-box (5’-GATAA-3’), BS1 (5’- AGCGGG-3’), MY3 (5’-CGACG-3’), 5’-CAGTGCGC-3’ and 5’-ACTCAT-3’ sequence in target gene promoters. DNA-binding and subsequent transcription activation is triggered by heterodimerization with other bZIP proteins (e.g. BZIP1, BZIP10 and BZIP25). Promotes POX1/PRODH1 expression in response to hypoosmolarity stress. Transcriptional activator of seed maturation (MAT) genes [...] (146 aa)
           
  0.587
DREB2C
Dehydration-responsive element-binding protein 2C; Encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought (341 aa)
           
  0.579
AT5G50010
Sequence-specific DNA binding transcription factors;transcription regulators; BEST Arabidopsis thaliana protein match is- sequence-specific DNA binding transcription factors;transcription regulators (TAIR-AT5G64340.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (311 aa)
           
  0.576
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]