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AT1G25530 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G25530" - Lysine histidine transporter-like 6 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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Experiments
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Textmining
[Homology]
Score
AT1G25530Lysine histidine transporter-like 6; Amino acid transporter (440 aa)    
Predicted Functional Partners:
AT1G25520
Putative transmembrane protein (230 aa)
           
  0.670
EXPB5
Expansin B5; May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity) (252 aa)
           
  0.632
AT1G25510
Aspartyl protease-like protein (483 aa)
           
  0.600
AT1G25550
Myb-like transcription factor-like protein (344 aa)
           
  0.489
LSH1
Uncharacterized protein; Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to continuous red (cR), far-red (cFR) and blue (cB) light in a phytochrome-dependent manner, at least during seedling development (190 aa)
     
   
  0.451
JAL22
Jacalin-related lectin 22; Inhibitor-type lectin that may regulate the correct polymerization and activation of BGLU23/PYK10 upon tissue damage (458 aa)
           
  0.449
GLT1
Glutamate synthase 1 [NADH]; Involved in glutamate biosynthesis. Required for non- photorespiratory ammonium assimilation. Probably involved in primary ammonium assimilation in roots (2208 aa)
           
  0.447
ECA2
ER-type Ca2+-ATPase 2; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to an endomembrane compartment (1054 aa)
           
  0.432
RFR1
REF4-related 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the re [...] (1309 aa)
           
  0.426
REF4
REDUCED EPIDERMAL FLUORESCENCE 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. [...] (1275 aa)
           
  0.420
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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