STRINGSTRING
AT1G25682 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G25682" - Family of unknown function in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G25682Family of unknown function (DUF572) (310 aa)    
Predicted Functional Partners:
AT4G21110
G10 family protein (145 aa)
     
 
  0.966
CDC5
Cell division cycle 5; Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence ’CTCAGCG’ binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage (844 aa)
     
 
  0.964
AT3G25700
Aspartyl protease family protein (452 aa)
     
   
  0.957
AT3G02500
Uncharacterized protein (293 aa)
           
  0.957
AT1G73950
Transmembrane Fragile-X-F-associated protein (466 aa)
           
  0.957
AT5G58450
Tetratricopeptide repeat-containing protein (1065 aa)
       
      0.947
AT1G03150
Peptide alpha-N-acetyltransferase (174 aa)
       
      0.945
AT1G10580
pre-mRNA-processing factor 17 (573 aa)
       
 
  0.931
SKIP
Chromatin protein family; Splicing factor involved in post-transcriptional regulation of circadian clock and flowering time genes. Associates with the pre-mRNA of PRR7, PRR9, ELF3 and GI, and is necessary for the regulation of their alternative splicing and mRNA maturation. Probably involved in splice site recognition (613 aa)
     
 
  0.921
MAC3B
MOS4-associated complex 3B; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity). Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity (525 aa)
     
 
  0.918
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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