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AT1G26200 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G26200" - TRAM, LAG1 and CLN8 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G26200TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (312 aa)    
Predicted Functional Partners:
AT2G26200
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (565 aa)
           
  0.862
RAB1A
RAB GTPase-1A; Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER) (By similarity) (202 aa)
           
  0.677
RABA1e
RAB GTPase homolog A1E; Intracellular vesicle trafficking and protein transport (217 aa)
       
 
  0.670
RABG3c
RAB GTPase homolog G3C; Intracellular vesicle trafficking and protein transport (206 aa)
           
  0.670
LCB2
Long chain base2; Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1 constitutes the catalytic core. Involved in the regulation of the programmed cell death (PCD) signaling pathway. Plays an important role during male gametogenesis and embryogenesis (489 aa)
     
   
  0.649
SYP32
Syntaxin-32; Vesicle trafficking protein that functions in the secretory pathway (361 aa)
           
  0.600
RAB7B
RAB GTPase homolog G3F; Intracellular vesicle trafficking and protein transport (206 aa)
           
  0.559
RAB11c
RAB GTPase 11C; Intracellular vesicle trafficking and protein transport (217 aa)
       
 
  0.558
GAD
Glutamate decarboxylase; Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis (502 aa)
       
 
  0.530
AT4G09070
TATA-binding related factor (TRF) of subunit 20 of Mediator complex; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and [...] (219 aa)
       
 
  0.530
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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