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STRINGSTRING
SOFL1 protein (Arabidopsis thaliana) - STRING interaction network
"SOFL1" - Uncharacterized protein At1g26210 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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Experiments
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Textmining
[Homology]
Score
SOFL1Uncharacterized protein At1g26210; AtSOFL1 acts redundantly with AtSOFL2 as positive regulator of cytokinin levels (148 aa)    
Predicted Functional Partners:
SOB5
Uncharacterized protein T22D6_90; Encodes SOB5. Activation tagging lines accumulated higher level of cytokinin (144 aa)
     
   
  0.967
AT5G38790
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G30580.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (131 aa)
           
  0.907
AT4G33800
At4g33800; Unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (170 aa)
           
  0.907
AT3G30580
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G38790.1); Has 75 Blast hits to 75 proteins in 16 species- Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 63; Viruses - 0; Other Eukaryotes - 8 (source- NCBI BLink) (128 aa)
           
  0.907
AT1G58460
At1g58460; Unknown protein; Has 35 Blast hits to 35 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (177 aa)
           
  0.907
DCI1
Encodes the peroxisomal delta 3,5-delta2,4-dienoyl-CoA isomerase, a enzyme involved in degradation of unsaturated fatty acids. Gene expression is induced upon seed germination (278 aa)
           
  0.734
STY2
Lateral root primordium (LRP) protein-related; Transcription activator that binds DNA on 5’-ACTCTAC-3’ and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI- related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of [...] (322 aa)
           
  0.612
AT2G44130
Galactose oxidase/kelch repeat superfamily protein; Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro-IPR011043), Kelch repeat type 1 (InterPro-IPR006652), Kelch related (InterPro-IPR013089), Kelch-type beta propeller (InterPro-IPR015915); BEST Arabidopsis thaliana protein match is- Galactose oxidase/kelch repeat superfamily protein (TAIR-AT3G59940.1); Has 5544 Blast hits to 3569 proteins in 209 species- Archae - 8; Bacteria - 363; Metazoa - 3928; Fungi - 26; Plants - 960; Viruses - 5; Other Eukary [...] (409 aa)
           
  0.611
LRP1
Lateral root primordium (LRP) protein-related; Transcription activator that binds DNA on 5’-ACTCTAC-3’ and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI- related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of [...] (407 aa)
           
  0.564
RRG
Protein of unknown function (DUF155); Contains the following InterPro domains- Protein of unknown function DUF155 (InterPro-IPR003734); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF155) (TAIR-AT5G13610.1); Has 567 Blast hits to 567 proteins in 242 species- Archae - 0; Bacteria - 202; Metazoa - 8; Fungi - 221; Plants - 79; Viruses - 0; Other Eukaryotes - 57 (source- NCBI BLink) (373 aa)
           
  0.551
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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