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AT1G26250 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G26250" - Proline-rich extensin-like family protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G26250Proline-rich extensin-like family protein (443 aa)    
Predicted Functional Partners:
AT4G08380
Proline-rich extensin-like family protein (437 aa)
     
   
  0.936
AT4G05030
Copper transport protein family (110 aa)
           
  0.910
AT1G31690
Putative copper amine oxidase (677 aa)
           
  0.709
EXT3
Extensin 3; Structural component which strengthens the primary cell wall (431 aa)
     
   
  0.667
RDM1
RNA-DIRECTED DNA METHYLATION 1; Regulator of RNA-directed DNA methylation (RdDM). Binds to single-stranded methyl DNA. Involved in the assembly of RNA polymerase V (Pol V) transcription initiation or elongation complexes at the chromatin, as a component of the DDR complex (163 aa)
           
  0.553
EIF4A-2
Eif4a-2; ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5’-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity) (412 aa)
           
  0.505
DMS3
DEFECTIVE IN MERISTEM SILENCING 3; Component of the RNA-directed DNA methylation (RdDM) machinery, probably by facilitating an RNAi-mediated epigenetic modification involving secondary siRNAs and spreading of DNA methylation, thus leading to gene silencing. Involved in the assembly of RNA polymerase V (Pol V) transcription initiation or elongation complexes at the chromatin, as a component of the DDR complex. Required for de novo DNA methylation (420 aa)
           
  0.471
EXT4
Extensin 4; Structural component which strengthens the primary cell wall (293 aa)
     
   
  0.439
AT5G19890
Peroxidase 59; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue (328 aa)
     
        0.438
AT4G31875
Uncharacterized protein (138 aa)
     
        0.436
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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