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STRINGSTRING
AT1G26330 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G26330" - DNA binding in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
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AT1G26330DNA binding; Its function is described as DNA binding; Involved in biological_process unknown; Located in nucleus; Expressed in 8 plant structures; Expressed during 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Contains the following InterPro domains- WD40 repeat-like-containing domain (InterPro-IPR011046), FY-rich, C-terminal (InterPro-IPR003889), WD40/YVTN repeat-like-containing domain (InterPro-IPR015943) (1194 aa)    
Predicted Functional Partners:
AT2G04870
Uncharacterized protein At2g04870; Unknown protein; Has 14 Blast hits to 14 proteins in 7 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink) (72 aa)
           
  0.968
AT1G25570
Di-glucose binding protein with Leucine-rich repeat domain; Located in plasma membrane, vacuole; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Malectin/receptor-like protein kinase (InterPro-IPR021720), Leucine-rich repeat (InterPro-IPR001611); BEST Arabidopsis thaliana protein match is- receptor like protein 4 (TAIR-AT1G28340.1); Has 39900 Blast hits to 11672 proteins in 418 species- Archae - 2; Bacteria - 388; Metazoa - 87; Fungi - 9; Plants - 38059; Viruses - 0; Other Eukaryotes - 1355 (source- NCBI BLink) (628 aa)
           
  0.968
AT1G42980
Actin-binding FH2 (formin homology 2) family protein; Its function is described as actin binding; Located in endomembrane system; Contains the following InterPro domains- Actin-binding FH2 (InterPro-IPR015425); BEST Arabidopsis thaliana protein match is- Formin Homology 14 (TAIR-AT1G31810.1); Has 905 Blast hits to 899 proteins in 94 species- Archae - 0; Bacteria - 0; Metazoa - 566; Fungi - 10; Plants - 221; Viruses - 0; Other Eukaryotes - 108 (source- NCBI BLink); Belongs to the formin-like family. Class-II subfamily (299 aa)
           
  0.967
AT4G10790
UBX domain-containing protein; Contains the following InterPro domains- UAS (InterPro-IPR006577), UBX (InterPro-IPR001012); BEST Arabidopsis thaliana protein match is- Ubiquitin-like superfamily protein (TAIR-AT4G23040.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (480 aa)
           
  0.952
At2g06200
Growth-regulating factor 6; Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower (244 aa)
     
   
  0.903
Hsp81.4
HEAT SHOCK PROTEIN 81.4; Molecular chaperone which stabilizes unfolding protein intermediates and functions as a folding molecular chaperone that assists the non-covalent folding of proteins in an ATP-dependent manner; Belongs to the heat shock protein 90 family (699 aa)
           
  0.527
HSP81-3
Heat shock protein 90-3; Functions as a holding molecular chaperone (holdase) which stabilizes unfolding protein intermediates and rapidly releases them in an active form once stress has abated. Functions as a folding molecular chaperone (foldase) that assists the non- covalent folding of proteins in an ATP-dependent manner. Regulates RPP4-mediated temperature-dependent cell death and defense responses. May assist SGT1B in the formation of SCF E3 ubiquitin ligase complexes that target the immune receptors SNC1, RPS2 and RPS4 for degradation, to regulate receptor levels and avoid autoimmunity (699 aa)
           
  0.463
CR88
Heat shock protein 90-5, chloroplastic; Molecular chaperone required for chloroplast biogenesis. Essential for chloroplast biogenesis and maintenance, and thus for embryogenesis. May be involved in the disassembly of VIPP1 for thylakoid membrane formation and/or maintenance. Cooperates with TIC components and other molecular chaperones to drive transport of preproteins into chloroplasts and functions in the chloroplast stroma to facilitate membrane translocation during protein import into the organelle (780 aa)
           
  0.410
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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