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AT1G26530 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G26530" - PIN domain-like family protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G26530PIN domain-like family protein; Contains the following InterPro domains- Protein of unknown function DUF652 (InterPro-IPR006984); BEST Arabidopsis thaliana protein match is- PIN domain-like family protein (TAIR-AT2G46230.1); Has 517 Blast hits to 517 proteins in 211 species- Archae - 4; Bacteria - 0; Metazoa - 206; Fungi - 155; Plants - 64; Viruses - 0; Other Eukaryotes - 88 (source- NCBI BLink) (178 aa)    
Predicted Functional Partners:
EDA14
Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA; Belongs to the UTP11 family (228 aa)
     
  0.999
AT3G10530
Transducin/WD40 repeat-like superfamily protein; Its function is described as nucleotide binding; Involved in biological_process unknown; Located in CUL4 RING ubiquitin ligase complex; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), BING4, C-terminal (InterPro-IPR012952), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain (InterPro-IPR017986), WD40/YVTN repeat-like-containing domain (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680), WD40 repeat, sub [...] (536 aa)
     
  0.999
AT1G06720
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as GTP binding, GTPase activity; Involved in ribosome biogenesis; Located in nucleus; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- AARP2CN (InterPro-IPR012948), Protein synthesis factor, GTP-binding (InterPro-IPR000795), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species- Archae - 49; Bac [...] (1147 aa)
     
  0.999
AT5G22100
Probable RNA 3’-terminal phosphate cyclase-like protein; Does not have cyclase activity. Plays a role in 40S- ribosomal-subunit biogenesis in the early pre-rRNA processing steps at sites A0, A1 and A2 that are required for proper maturation of the 18S RNA (By similarity) (375 aa)
     
  0.999
AT5G15750
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Its function is described as RNA binding, rRNA binding; Located in cytosolic small ribosomal subunit; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein S4 (InterPro-IPR001912), RNA-binding S4 (InterPro-IPR002942); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (182 aa)
     
  0.999
AT5G08420
RNA-binding KH domain-containing protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (391 aa)
     
  0.999
AT3G57000
Nucleolar essential protein-related; Contains the following InterPro domains- Ribosomal biogenesis, methyltransferase, EMG1/NEP1 (InterPro-IPR005304); Has 1079 Blast hits to 938 proteins in 280 species- Archae - 143; Bacteria - 12; Metazoa - 353; Fungi - 181; Plants - 69; Viruses - 2; Other Eukaryotes - 319 (source- NCBI BLink) (298 aa)
     
  0.999
AT3G28230
Something about silencing protein; Its function is described as molecular_function unknown; Involved in gene silencing; Located in nucleus; Expressed in 15 plant structures; Expressed during 6 growth stages; Contains the following InterPro domains- Something about silencing protein 10 (Sas10), C-terminal (InterPro-IPR018972); BEST Arabidopsis thaliana protein match is- Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR-AT2G43650.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu [...] (174 aa)
     
  0.999
EMB2777
Sas10/U3 ribonucleoprotein (Utp) family protein; EMBRYO DEFECTIVE 2777 (EMB2777); Its function is described as molecular_function unknown; Involved in gene silencing; Located in nucleus; Expressed in 22 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- Sas10/Utp3/C1D (InterPro-IPR007146), Something about silencing protein 10 (Sas10), C-terminal (InterPro-IPR018972); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G28230.2); Has 14657 Blast hits to 10395 proteins in 729 species- Archae - 127; Bacteria - 2247; Metazoa - 474 [...] (654 aa)
     
  0.999
AT4G28200
U3 small nucleolar RNA-associated-like protein; Its function is described as molecular_function unknown; Involved in RNA processing; Located in intracellular; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA-processing protein, HAT helix (InterPro-IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro-IPR013949); Has 492 Blast hits to 480 proteins in 206 species- Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source- NCBI BLink) (648 aa)
     
  0.999
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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