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SDG35 protein (Arabidopsis thaliana) - STRING interaction network
"SDG35" - SET domain protein 35 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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SDG35SET domain protein 35 (SDG35); Its function is described as binding; Involved in biological_process unknown; Expressed in 21 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- SET domain (InterPro-IPR001214), Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide repeat-containing (InterPro-IPR013026), Tetratricopeptide repeat (InterPro-IPR019734); BEST Arabidopsis thaliana protein match is- SET domain group 37 (TAIR-AT2G17900.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 173 [...] (545 aa)    
Predicted Functional Partners:
AT1G26790
Dof-type zinc finger DNA-binding family protein; Transcription factor that binds specifically to a 5’- AA[AG]G-3’ consensus core sequence (396 aa)
           
  0.899
TPR9
Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- SET domain (InterPro-IPR001214), Tetratricopeptide TPR-1 (InterPro-IPR001440), Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide repeat-containing (InterPro-IPR013026), Tetratricopeptide repeat (InterPro-IPR019734); BEST Arabidopsis thaliana protein match is- tetratricopetide-repeat thi [...] (798 aa)
           
  0.839
ASHH1
Histone-lysine N-methyltransferase ASHH1; Histone methyltransferase involved in regulation of flowering time. Required for the expression of the SOC1/AGL20 gene. Required for histone H3 trimethylation on ’Lys-4’ (H3K4me3) at the SOC1 locus. Prevents trimethylation on ’Lys-27’ (H3K27me3) at the same locus; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily (492 aa)
           
  0.838
ATXR6
Histone-lysine N-methyltransferase ATXR6; Histone methyltransferase that specifically monomethylates ’Lys-37’ of histone H3 (H3K27me1). Has higher activity on nucleosomes containing H3.1 than H3.3. Involved in the formation of constitutive heterochromatin and the silencing of heterochromatic elements. May act as a positive regulator of the G1-S transition. Influences which sets of rRNA gene variants are expressed or silenced. Up-regulated by E2FB (349 aa)
     
   
  0.790
AT1G26795
Plant self-incompatibility protein S1 family; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in 12 plant structures; Expressed during 7 growth stages; Contains the following InterPro domains- Plant self-incompatibility S1 (InterPro-IPR010264); BEST Arabidopsis thaliana protein match is- Plant self-incompatibility protein S1 family (TAIR-AT1G26796.1); Has 200 Blast hits to 188 proteins in 12 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 [...] (151 aa)
           
  0.770
SDG29
Histone-lysine N-methyltransferase ATX5; Homology Subgroup III; Orthology Group 2 - A putative histone methyltransferase (predicted to methylate H3K4) related to the Drosophila trithorax group proteins TRX and TRR and the yeast gene SET1. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation (1043 aa)
       
 
  0.768
ATXR5
Histone-lysine N-methyltransferase ATXR5; Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation (379 aa)
           
  0.767
ASHH4
Putative histone-lysine N-methyltransferase ASHH4; Histone methyltransferase (352 aa)
     
   
  0.749
SUVR5
Nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding; Histone methyltransferase that functions together with its binding partner LDL1/SWP1 as one of the regulators of flower timing in Arabidopsis. Mediates H3K9me2 deposition and regulates gene expression in a DNA methylation- independent manner. Binds DNA through its zinc fingers and represses the expression of a subset of stimulus response genes. May represent a novel mechanism for plants to regulate their chromatin and transcriptional state, which may allow for the adaptability and modulation nece [...] (1382 aa)
       
 
  0.679
SDG25
Histone-lysine N-methyltransferase ATXR7; Histone methyltransferase involved in regulation of flowering time. Required for the expression of the flowering repressors FLC and MADS-box genes of the MAF family. Required for histone H3 dimethylation on ’Lys-36’ H3K36me2 at the FLC locus. Required for histone H3 trimethylation on ’Lys- 4’ (H3K4me3) at the FLC locus. Prevents trimethylation on ’Lys-27’ (H3K27me3) at the same locus. Involved in the control of seed dormancy and germination (1423 aa)
       
 
  0.655
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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