STRINGSTRING
AT1G26920 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G26920" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G26920Uncharacterized protein (173 aa)    
Predicted Functional Partners:
ECT5
Uncharacterized protein (634 aa)
           
  0.921
AT1G47400
Uncharacterized protein (50 aa)
           
  0.670
AT5G05250
Uncharacterized protein (239 aa)
           
  0.631
AE7
AS1/2 ENHANCER7; Central member of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) pathway (PubMed-23104832). Involved in leaf polarity formation (PubMed-21070412). Promotes leaf adaxial identity (PubMed-21070412). May play a role in the cell cycle progression and is required for cell proliferation (PubMed-21070412) (159 aa)
           
  0.631
SRC2
Uncharacterized protein; May act as an activator of the calcium-dependent activation of RBOHF that mediates reactive oxygene species (ROS) production and may play a role in cold responses (324 aa)
           
  0.555
VSR2
VACUOLAR SORTING RECEPTOR 2; Vacuolar-sorting receptor (VSR) involved in clathrin- coated vesicles sorting from Golgi apparatus to vacuoles (641 aa)
           
  0.552
SmD3
snRNP core protein SMD3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). May play a minor role in the splicing of cellular pre-mRNAs (PubMed-21421416) (128 aa)
           
  0.552
PATL1
PATELLIN 1; Carrier protein that may be involved in membrane- trafficking events associated with cell plate formation during cytokinesis. Binds to some hydrophobic molecules and promotes their transfer between the different cellular sites. Binds to phosphoinositides with a preference for PtdIns(5)P, PtdIns(4,5)P2 and PtdIns(3)P (573 aa)
           
  0.491
VAP27-1
Vesicle associated protein; Part of a membrane-cytoskeletal adapter complex that forms a bridge between the endoplasmic reticulum and the plasma membrane. Associates with microtubules (256 aa)
           
  0.474
EDD1
glycine-tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Is also able produce diadenosine tetraphosphate (Ap4A), a universal pleiotropic signaling molecule needed for cell regulation pathways, by direct condensation of 2 ATPs (1067 aa)
           
  0.447
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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