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STRINGSTRING
AT1G27060 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G27060" - Regulator of chromosome condensation in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G27060Regulator of chromosome condensation (RCC1) family protein; Contains the following InterPro domains- Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro-IPR009091), Regulator of chromosome condensation, RCC1 (InterPro-IPR000408); BEST Arabidopsis thaliana protein match is- Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR-AT5G19420.1); Has 19815 Blast hits to 6041 proteins in 472 species- Archae - 85; Bacteria - 2553; Metazoa - 7293; Fungi - 979; Plants - 2476; Viruses - 2; Other Eukaryotes - 6427 (source- NCBI BLink) (386 aa)    
Predicted Functional Partners:
AT2G15910
CSL zinc finger domain-containing protein; Contains the following InterPro domains- Zinc finger, DPH-type (InterPro-IPR007872); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G44150.1); Has 443 Blast hits to 441 proteins in 195 species- Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 134; Plants - 116; Viruses - 0; Other Eukaryotes - 58 (source- NCBI BLink) (367 aa)
     
 
  0.852
RAN3
GTP-binding nuclear protein Ran-3; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity); Belongs to the small GTPase superfamily. Ran family (221 aa)
     
 
  0.673
RAN4
GTP-binding nuclear protein Ran-4; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity) (222 aa)
     
 
  0.673
RAN2
RAS-related GTP-binding nuclear protein 2; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity) (221 aa)
     
 
  0.673
RAN-1
GTP-binding nuclear protein Ran-1; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity); Belongs to the small GTPase superfamily. Ran family (221 aa)
     
 
  0.673
AT5G52970
Thylakoid lumen 15.0 kDa protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; Expressed in 20 plant structures; Expressed during 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (223 aa)
           
  0.665
RANGAP2
RAN GTPase activating protein 2; GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state; Belongs to the RNA1 family (545 aa)
     
 
  0.660
RANGAP1
RAN GTPase activating protein 1; GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Plays a role in spatial signaling during cell division (535 aa)
     
 
  0.660
AT3G06000
RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is- RAN GTPase activating protein 2 (TAIR-AT5G19320.1); Has 2389 Blast hits to 1517 proteins in 172 species- Archae - 0; Bacteria - 173; Metazoa - 1218; Fungi - 45; Plants - 294; Viruses - 0; Other Eukaryotes - 659 (source- NCBI BLink) (211 aa)
     
 
  0.660
AT1G48950
C3HC zinc finger-like ; Its function is described as zinc ion binding; Involved in biological_process unknown; Located in nucleus, chloroplast; Expressed in 24 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Zinc finger, C3HC-like (InterPro-IPR012935); BEST Arabidopsis thaliana protein match is- IAP-like protein 1 (TAIR-AT1G17210.1); Has 249 Blast hits to 238 proteins in 100 species- Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 80; Plants - 75; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink) (594 aa)
     
   
  0.647
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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