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STRINGSTRING
AT1G27110 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G27110" - Tetratricopeptide repeat in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G27110Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as binding; Involved in biological_process unknown; Located in cellular_component unknown; Contains the following InterPro domains- Tetratricopeptide-like helical (InterPro-IPR011990); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT1G27150.1); Has 512 Blast hits to 499 proteins in 150 species- Archae - 27; Bacteria - 221; Metazoa - 81; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 121 (source- NCBI BLink) (483 aa)    
Predicted Functional Partners:
AT4G29650
Cytidine/deoxycytidylate deaminase family protein; Its function is described as cytidine deaminase activity, catalytic activity, zinc ion binding; Involved in pyrimidine salvage, cytidine metabolic process; Located in cellular_component unknown; Contains the following InterPro domains- Cytidine deaminase, homodimeric (InterPro-IPR006263), Cytidine deaminase-like (InterPro-IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro-IPR013171); BEST Arabidopsis thaliana protein match is- Cytidine/deoxycytidylate deaminase family protein (TAIR-AT4G29610.1); Has 939 Blast [...] (251 aa)
       
      0.558
AT4G29640
Cytidine/deoxycytidylate deaminase family protein; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis (346 aa)
       
      0.558
AT4G29630
Cytidine/deoxycytidylate deaminase family protein; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis (223 aa)
       
      0.558
AT4G29620
Cytidine/deoxycytidylate deaminase family protein; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis (337 aa)
       
      0.558
AT4G29610
Cytidine/deoxycytidylate deaminase family protein; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis (293 aa)
       
      0.558
AT4G29600
Cytidine/deoxycytidylate deaminase family protein; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis (307 aa)
       
      0.558
AT4G29580
Cytidine/deoxycytidylate deaminase family protein; Its function is described as cytidine deaminase activity, catalytic activity, zinc ion binding; Involved in cytidine deamination, cytidine metabolic process; Located in cellular_component unknown; Expressed in sperm cell; Contains the following InterPro domains- Cytidine deaminase, homodimeric (InterPro-IPR006263), Cytidine deaminase-like (InterPro-IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro-IPR013171); BEST Arabidopsis thaliana protein match is- Cytidine/deoxycytidylate deaminase family protein (TAIR- [...] (445 aa)
       
      0.558
AT4G29570
Cytidine/deoxycytidylate deaminase family protein; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis (293 aa)
       
      0.558
CDA1
Cytidine deaminase 1; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis. Functions as a conventional cytidine deaminase. Has no affinity for RNA and is not involved in RNA-editing by C-to-U deamination (301 aa)
       
      0.558
AT1G19140
Ubiquinone biosynthesis COQ9-like protein; Its function is described as molecular_function unknown; Involved in ubiquinone biosynthetic process; Located in mitochondrion; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- COQ9 (InterPro-IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro-IPR012762); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (312 aa)
           
  0.459
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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