STRINGSTRING
AT1G27135 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G27135" - Maternally expressed family protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G27135Maternally expressed family protein (88 aa)    
Predicted Functional Partners:
LCR58
Putative defensin-like protein 180 (127 aa)
           
  0.807
RALFL6
RALF-like 6; Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity) (81 aa)
           
  0.807
AT5G66000
Uncharacterized protein (215 aa)
           
  0.806
AT5G60370
Uncharacterized protein; Single-stranded DNA (ssDNA) bidirectional exonuclease. Has both 5’-3’ and 3’-5’ exonuclease activities with a strong preference for 5’-ends (By similarity) (413 aa)
           
  0.806
emb1379
Embryo defective 1379 (312 aa)
           
  0.804
AT5G44973
Defensin-like protein 285 (102 aa)
           
  0.803
AT3G20760
Nse4, component of Smc5/6 DNA repair complex; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double- stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids (383 aa)
           
  0.803
AT1G51130
Nse4, component of Smc5/6 DNA repair complex; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double- stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids (403 aa)
           
  0.803
AT1G79890
RAD3-like DNA-binding helicase protein (882 aa)
           
  0.802
SMC5
Structural maintenance of chromosomes 5; Core component of the SMC5-SMC6 complex that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids (1053 aa)
           
  0.738
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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