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AT1G27160 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G27160" - valyl-tRNA synthetase / valine--tRNA ligase-related in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G27160valyl-tRNA synthetase / valine--tRNA ligase-related (200 aa)    
Predicted Functional Partners:
RPL5B
Ribosomal protein L5 B; Binds to 5S ribosomal RNA (301 aa)
     
 
  0.932
RPL5A
Ribosomal protein L5; Binds to 5S ribosomal RNA (301 aa)
     
 
  0.932
EMB3105
EMBRYO DEFECTIVE 3105; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit (170 aa)
     
 
  0.932
AT4G23620
Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (277 aa)
   
 
  0.915
AT4G13780
methionyl-tRNA synthetase (797 aa)
     
 
  0.911
RPL3P
50S ribosomal protein L3-2; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (324 aa)
     
 
  0.909
AT2G43030
50S ribosomal protein L3-1; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (271 aa)
     
 
  0.909
RPL3B
R-protein L3 B (390 aa)
     
 
  0.909
EMB2207
Ribosomal protein 1 (389 aa)
     
 
  0.909
RPL23.2
Ribosomal protein L23; Binds to 23S rRNA (93 aa)
     
 
  0.909
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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