STRINGSTRING
AT1G27170 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G27170" - Transmembrane receptors in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G27170Transmembrane receptors;ATP binding (1384 aa)    
Predicted Functional Partners:
AT5G46530
AWPM-19-like protein (157 aa)
           
  0.828
TRM12
Uncharacterized protein (689 aa)
           
  0.749
AT3G26560
ATP-dependent RNA helicase, putative; May be involved in pre-mRNA splicing (1168 aa)
     
 
  0.697
AT2G40860
Putative protein phosphatase 2C 31 (658 aa)
     
  0.687
AT3G24530
AAA-type ATPase family protein / ankyrin repeat family protein (481 aa)
       
 
  0.664
FAB1C
FORMS APLOID AND BINUCLEATE CELLS 1C; The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Catalyzes the phosphorylation of phosphatidylinositol 3-phosphate on the fifth hydroxyl of the myo- inositol ring, to form phosphatidylinositol 3,5-bisphosphate (By similarity) (1648 aa)
     
  0.659
AT1G02080
Transcription regulators (2431 aa)
     
 
  0.649
At5g47320
Ribosomal protein S19; The RNA-binding domain found in RPS19 may functionally replaces the missing mitochondrial RPS13 (212 aa)
       
  0.639
U1A
Spliceosomal protein U1A; Involved in nuclear pre-mRNA splicing (By similarity). Seems to not be involved in polyadenylation (250 aa)
     
  0.620
U2B'
U2 small nuclear ribonucleoprotein B; Involved in nuclear pre-mRNA splicing (232 aa)
     
  0.620
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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