STRINGSTRING
AT1G27300 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G27300" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G27300Uncharacterized protein (200 aa)    
Predicted Functional Partners:
TI1
Defensin-like protein 195 (89 aa)
     
      0.646
SYP51
Syntaxin-51; Vesicle trafficking protein that functions in the secretory pathway (232 aa)
     
      0.627
AT2G20740
Tetraspanin family protein; May be involved in the regulation of cell differentiation (221 aa)
     
      0.614
NAC089
NAC domain containing protein 89; Transcription factor involved in plant cell division (340 aa)
     
      0.613
AT4G17486
PPPDE putative thiol peptidase-like protein (224 aa)
     
      0.604
NTL9
NAC transcription factor-like 9; Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed-18443413, PubMed-24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed-17947243). Functions synergistically with SNI1 as negative regulator of pathogen- induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed-22826500). Acts as positive regulator of innate immunity. Involved in [...] (534 aa)
     
      0.598
AT5G61340
Uncharacterized protein (326 aa)
       
      0.588
GLT1
Glutamate synthase 1 [NADH]; Involved in glutamate biosynthesis. Required for non- photorespiratory ammonium assimilation. Probably involved in primary ammonium assimilation in roots (2208 aa)
       
      0.588
AT5G51010
Rubredoxin-like protein (154 aa)
       
      0.588
maMYB
Membrane anchored MYB (309 aa)
       
      0.588
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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