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AT1G27330 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G27330" - Ribosome associated membrane protein RAMP4 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G27330Ribosome associated membrane protein RAMP4; Contains the following InterPro domains- Ribosome associated membrane RAMP4 (InterPro-IPR010580); BEST Arabidopsis thaliana protein match is- Ribosome associated membrane protein RAMP4 (TAIR-AT1G27350.1); Has 348 Blast hits to 348 proteins in 106 species- Archae - 0; Bacteria - 0; Metazoa - 210; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 38 (source- NCBI BLink) (68 aa)    
Predicted Functional Partners:
AT2G22425
Microsomal signal peptidase 12 kDa subunit (SPC12); Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum (92 aa)
     
   
  0.942
AT4G40042
Microsomal signal peptidase 12 kDa subunit (SPC12); Its function is described as peptidase activity; Involved in signal peptide processing; Located in endomembrane system, integral to membrane, signal peptidase complex; Contains the following InterPro domains- Microsomal signal peptidase 12kDa subunit (InterPro-IPR009542); BEST Arabidopsis thaliana protein match is- Microsomal signal peptidase 12 kDa subunit (SPC12) (TAIR-AT2G22425.2); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu [...] (93 aa)
     
   
  0.942
At2g45070
Preprotein translocase Sec, Sec61-beta subunit protein; Necessary for protein translocation in the endoplasmic reticulum (82 aa)
     
 
  0.921
AT3G60540
Preprotein translocase Sec, Sec61-beta subunit protein; Necessary for protein translocation in the endoplasmic reticulum (81 aa)
     
 
  0.916
AT1G52600
Peptidase S24/S26A/S26B/S26C family protein; Its function is described as peptidase activity; Involved in proteolysis, signal peptide processing; Located in endoplasmic reticulum, plasma membrane, membrane; Expressed in 26 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Peptidase S24/S26A/S26B, conserved region (InterPro-IPR019759), Peptidase S26B, eukaryotic signal peptidase (InterPro-IPR001733), Peptidase S24/S26A/S26B/S26C (InterPro-IPR015927); BEST Arabidopsis thaliana protein match is- Peptidase S24/S26A/S26B/S26C family protein (TAIR- [...] (180 aa)
     
 
  0.913
AT5G60460
Preprotein translocase Sec, Sec61-beta subunit protein; Necessary for protein translocation in the endoplasmic reticulum (109 aa)
     
 
  0.910
AT3G15710
Peptidase S24/S26A/S26B/S26C family protein; Its function is described as peptidase activity; Involved in proteolysis, signal peptide processing; Located in endoplasmic reticulum, plasma membrane, membrane; Expressed in 26 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Peptidase S24/S26A/S26B, conserved region (InterPro-IPR019759), Peptidase S26B, eukaryotic signal peptidase (InterPro-IPR001733), Peptidase S24/S26A/S26B/S26C (InterPro-IPR015927); BEST Arabidopsis thaliana protein match is- Peptidase S24/S26A/S26B/S26C family protein (TAIR- [...] (180 aa)
     
 
  0.909
ATDAD1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains. Possesses cell death-inhibiting activity; Belongs to the DAD/OST2 family (115 aa)
     
        0.906
AT3G06240
F-box/kelch-repeat protein At3g06240; F-box family protein; Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), F-box domain, Skp2-like (InterPro-IPR022364), F-box associated domain, type 1 (InterPro-IPR006527), F-box associated interaction domain (InterPro-IPR017451); BEST Arabidopsis thaliana protein match is- F-box and associated interaction domains-containing protein (TAIR-AT4G12560.2); Has 2015 Blast hits to 1993 proteins in 48 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 2 (source- N [...] (427 aa)
           
  0.903
AT1G05550
Protein of unknown function (DUF295); Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 6 plant structures; Expressed during 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Contains the following InterPro domains- Protein of unknown function DUF295 (InterPro-IPR005174); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF295) (TAIR-AT1G05540.1) (385 aa)
           
  0.903
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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