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STRINGSTRING
LCR protein (Arabidopsis thaliana) - STRING interaction network
"LCR" - Galactose oxidase/kelch repeat superfamily protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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LCRGalactose oxidase/kelch repeat superfamily protein; Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), F-box domain, Skp2-like (InterPro-IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro-IPR011043); BEST Arabidopsis thaliana protein match is- Galactose oxidase/kelch repeat superfamily protein (TAIR-AT5G15710.1); Has 1110 Blast hits to 1104 proteins in 52 species- Archae - 0; Bacteria - 1; Metazoa - 2; Fungi - 0; Plants - 1106; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink) (467 aa)    
Predicted Functional Partners:
SPL11
Squamosa promoter-binding-like protein 11; In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase (393 aa)
           
  0.682
SPL10
Squamosa promoter-binding-like protein 10; In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL10 also controls lamina shape during vegetative development (396 aa)
           
  0.681
SKP1
S phase kinase-associated protein 1; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F- box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(A [...] (160 aa)
       
 
  0.657
LCR2
Low-molecular-weight cysteine-rich 2; Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family (89 aa)
           
  0.612
TCP24
TEOSINTE BRANCHED 1, cycloidea, and PCF family 24; Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary- specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (324 aa)
           
  0.592
TCP2
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary- specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment. Participates in ovule develpment. Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (365 aa)
           
  0.585
AT1G77260
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Contains the following InterPro domains- Protein of unknown function DUF248, methyltransferase putative (InterPro-IPR004159); BEST Arabidopsis thaliana protein match is- S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR-AT2G39750.1); Has 919 Blast hits to 909 proteins in 49 species- Archae - 0; Bacteria - 17; Metazoa - 3; Fungi - 4; Plants - 891; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink) (655 aa)
           
  0.582
MLP423
MLP-like protein 423 (MLP423); Involved in response to biotic stimulus, defense response; Expressed in 22 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Bet v I allergen (InterPro-IPR000916); BEST Arabidopsis thaliana protein match is- MLP-like protein 28 (TAIR-AT1G70830.3) (155 aa)
           
  0.579
MYB33
Transcription factor MYB33; Transcriptional activator of alpha-amylase expression that binds to 5’-CAACTGTC-3’ motif in target gene promoter. Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination. In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone- related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB65 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination. Binds t [...] (520 aa)
           
  0.573
PHB
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA; Belongs to the HD-ZIP homeobox family. Class III subfamily (852 aa)
           
  0.571
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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