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AT1G27400 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G27400" - 60S ribosomal protein L17-1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G2740060S ribosomal protein L17-1 (176 aa)    
Predicted Functional Partners:
AT3G47370
40S ribosomal protein S20-2 (122 aa)
   
  0.999
AT5G22440
60S ribosomal protein L10a-3 (217 aa)
   
  0.999
AT4G10450
60S ribosomal protein L9-2 (194 aa)
   
  0.999
AT5G02870
60S ribosomal protein L4-2 (407 aa)
   
  0.999
RPL23AB
Ribosomal protein L23AB; Binds to a specific region on the 26S rRNA (154 aa)
   
  0.999
RPL23AA
Ribosomal protein L23AA; Binds to a specific region on the 26S rRNA (154 aa)
   
  0.999
AT3G52580
40S ribosomal protein S14-3 (150 aa)
   
  0.999
RPS11-BETA
Ribosomal protein S11-beta (159 aa)
   
  0.999
AT3G07110
60S ribosomal protein L13a-1 (207 aa)
   
  0.999
AT2G37190
60S ribosomal protein L12-1; Binds directly to 26S ribosomal RNA (166 aa)
   
  0.999
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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