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AT1G27570 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G27570" - Phosphatidylinositol 3- and 4-kinase family protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
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gene co-occurrence
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textmining
co-expression
protein homology
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AT1G27570Phosphatidylinositol 3- and 4-kinase family protein; Its function is described as inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in sperm cell; Contains the following InterPro domains- Phosphatidylinositol 3-/4-kinase, catalytic (InterPro-IPR000403), Armadillo-type fold (InterPro-IPR016024), Protein of unknown function DUF3453 (InterPro-IPR021850); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G27590.1); Has [...] (649 aa)    
Predicted Functional Partners:
AT5G54710
Ankyrin repeat family protein; Involved in biological_process unknown; Located in endomembrane system; Contains the following InterPro domains- Ankyrin repeat-containing domain (InterPro-IPR020683), Ankyrin repeat (InterPro-IPR002110); BEST Arabidopsis thaliana protein match is- Ankyrin repeat family protein (TAIR-AT1G34050.1); Has 20807 Blast hits to 11728 proteins in 551 species- Archae - 16; Bacteria - 1568; Metazoa - 11429; Fungi - 1235; Plants - 2476; Viruses - 139; Other Eukaryotes - 3944 (source- NCBI BLink) (598 aa)
     
   
  0.954
AT3G21960
Receptor-like protein kinase-related family protein; Its function is described as hydrolase activity, hydrolyzing O-glycosyl compounds; Involved in carbohydrate metabolic process; Located in endomembrane system; Expressed in petal, leaf whorl, flower; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Glycoside hydrolase, family 35 (InterPro-IPR001944), Protein of unknown function DUF26 (InterPro-IPR002902); BEST Arabidopsis thaliana protein match is- Receptor-like protein kinase-related family protein (TAIR-AT2G31620.1); Ha [...] (441 aa)
           
  0.952
AT1G73820
Ssu72-like family protein; Its function is described as phosphoprotein phosphatase activity; Involved in mRNA processing; Located in chloroplast; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA polymerase II subunit A (InterPro-IPR006811); Has 454 Blast hits to 453 proteins in 177 species- Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 149; Plants - 48; Viruses - 0; Other Eukaryotes - 29 (source- NCBI BLink) (193 aa)
     
 
  0.938
CPSF160
Cleavage and polyadenylation specificity factor subunit 1; CPSF plays a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction; Belongs to the CPSF1 family (1442 aa)
     
 
  0.938
CPSF100
Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3’end formation apparatus (739 aa)
     
 
  0.937
CSTF77
Tetratricopeptide repeat (TPR)-like superfamily protein; One of the multiple factors required for polyadenylation and 3’-end cleavage of pre-mRNAs (By similarity). Required for the targeted 3’ processing of antisense transcripts that triggers transcriptional silencing of the corresponding sense gene (734 aa)
     
 
  0.934
FY
Transducin/WD40 repeat-like superfamily protein; Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for the negative autoregulation of FCA expression. Acts probably as an RNA 3’ end-processing factor. Required for growth and development in plants (653 aa)
     
 
  0.932
emb2746
RNA-metabolising metallo-beta-lactamase family protein; Embryo defective 2746 (emb2746); Its function is described as hydrolase activity, DNA binding, catalytic activity; Involved in metabolic process, embryo development ending in seed dormancy; Located in chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- SANT, DNA-binding (InterPro-IPR001005), RNA-metabolising metallo-beta-lactamase (InterPro-IPR011108), Beta-lactamase-like (InterPro-IPR001279), MYB-like (InterPro-IPR017877); BEST Arabidopsis thaliana protein mat [...] (911 aa)
     
 
  0.923
CPSF73-I
Cleavage and polyadenylation specificity factor subunit 3-I; Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. May function as mRNA 3’-end- processing endonuclease and also be involved in the histone 3’-end pre-mRNA processing (693 aa)
     
 
  0.923
CSTF64
Cleavage stimulating factor 64; One of the multiple factors required for polyadenylation and 3’-end cleavage of pre-mRNAs (By similarity). This subunit is directly involved in the binding to pre-mRNAs, especially on the 3’ non-coding region. Required for the targeted 3’ processing of antisense transcripts that triggers transcriptional silencing of the corresponding sense gene (461 aa)
     
 
  0.917
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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