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AT1G27570 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G27570" - Phosphatidylinositol 3-and 4-kinase-like protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Experiments
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[Homology]
Score
AT1G27570Phosphatidylinositol 3-and 4-kinase-like protein (649 aa)    
Predicted Functional Partners:
AT1G73820
Ssu72-like protein (193 aa)
       
 
  0.969
CPSF160
Cleavage and polyadenylation specificity factor 160; CPSF plays a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction (1442 aa)
     
 
  0.961
CPSF100
Cleavage and polyadenylation specificity factor 100; CPSF plays a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition (By similarity). Required for antisense-RNA- mediated gene silencing (PubMed-17008405) (739 aa)
     
 
  0.960
FY
Flowering time control protein FY; Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for the negative autoregulation of FCA expression. Acts probably as an RNA 3’ end-processing factor. Required for growth and development in plants (653 aa)
     
 
  0.960
FIP1[V]
FIP1 [V]-like protein; Essential gene (PubMed-16282318). Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex (By similarity) (1196 aa)
       
 
  0.957
CSTF77
Tetratricopeptide repeat-containing protein; One of the multiple factors required for polyadenylation and 3’-end cleavage of pre-mRNAs (By similarity). Required for the targeted 3’ processing of antisense transcripts that triggers transcriptional silencing of the corresponding sense gene (PubMed-19965720) (734 aa)
     
 
  0.957
AT5G54710
Ankyrin repeat family protein (598 aa)
     
   
  0.957
AT5G09630
LisH/CRA/RING-U-box domain-containing protein (386 aa)
     
   
  0.956
AT4G37685
Uncharacterized protein (163 aa)
           
  0.955
AT3G21960
Putative cysteine-rich repeat secretory protein 24 (441 aa)
           
  0.955
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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