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CYCT1;3 protein (Arabidopsis thaliana) - STRING interaction network
"CYCT1;3" - Cyclin T 1 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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CYCT1;3Cyclin T 1;3 (CYCT1;3); Contains the following InterPro domains- Cyclin-like (InterPro-IPR011028), Transcription regulator cyclin (InterPro-IPR015429), Cyclin-related (InterPro-IPR013763), Cyclin, N-terminal (InterPro-IPR006671), Cyclin (InterPro-IPR006670); BEST Arabidopsis thaliana protein match is- Cyclin family protein (TAIR-AT5G45190.1); Has 1569 Blast hits to 1569 proteins in 224 species- Archae - 0; Bacteria - 0; Metazoa - 847; Fungi - 342; Plants - 269; Viruses - 0; Other Eukaryotes - 111 (source- NCBI BLink) (317 aa)    
Predicted Functional Partners:
CDKC2
Cyclin dependent kinase group C2; Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily (513 aa)
     
  0.997
CDKC;1
Cyclin-dependent kinase C-1; Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development (505 aa)
     
  0.994
CDKD1;1
Cyclin-dependent kinase D1;1; Cyclin dependent kinase activator CDKD;1. Nuclear localization. Involved in cell cycle regulation and cell differentiation (398 aa)
     
  0.975
CAK4
Cyclin-dependent kinase D-2; Forms a stable complex with cyclin CYCH1-1 that phosphorylates human CDK2 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily (348 aa)
     
  0.975
CDKD1;3
Cyclin-dependent kinase D1;3; May form a stable complex with cyclin CYCH1-1 that phosphorylates human CDK2 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily (391 aa)
     
  0.975
AT1G18340
RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (301 aa)
     
  0.969
At2g33540
RNA polymerase II C-terminal domain phosphatase-like 3; Processively dephosphorylates ’Ser-2’ and/or ’Ser-5’ of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated signaling pathway and cold resistance (1241 aa)
         
  0.967
AT4G30820
Uncharacterized protein At4g30820; Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related; Its function is described as molecular_function unknown; Involved in cell cycle; Located in nucleus; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Cdk-activating kinase assembly factor (MAT1) (InterPro-IPR004575), Cdk-activating kinase assembly factor, MAT1 (InterPro-IPR015877); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 173 [...] (178 aa)
     
  0.966
AT4G17020
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA; Belongs to the TFB2 family (482 aa)
       
  0.965
TFIIS
Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy (378 aa)
       
  0.960
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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