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AT1G27890 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G27890" - Polynucleotidyl transferase, ribonuclease H-like superfamily protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G27890Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity) (302 aa)    
Predicted Functional Partners:
AT1G02080
Transcription regulators; Its function is described as transcription regulator activity; Located in membrane; Expressed in 25 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- CCR4-Not complex component, Not1 (InterPro-IPR007196); Has 1434 Blast hits to 680 proteins in 246 species- Archae - 0; Bacteria - 196; Metazoa - 419; Fungi - 362; Plants - 144; Viruses - 0; Other Eukaryotes - 313 (source- NCBI BLink) (2431 aa)
     
 
  0.911
VIP2
Probable NOT transcription complex subunit VIP2; Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator; Belongs to the CNOT2/3/5 family (614 aa)
     
  0.904
AT5G18230
Transcription regulator NOT2/NOT3/NOT5 family protein; Its function is described as transcription regulator activity; Involved in negative regulation of transcription, regulation of transcription; Located in nucleus; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- NOT2/NOT3/NOT5 (InterPro-IPR007282), CCR4-NOT complex, subunit 3/ 5 (InterPro-IPR012270), Not CCR4-Not complex component, N-terminal (InterPro-IPR007207); BEST Arabidopsis thaliana protein match is- NOT2 / NOT3 / NOT5 family (TAIR-AT1G07705.2); Has 3972 Blast hits [...] (845 aa)
       
 
  0.900
AT5G12980
Cell differentiation, Rcd1-like protein; Contains the following InterPro domains- Cell differentiation, Rcd1-like (InterPro-IPR007216); BEST Arabidopsis thaliana protein match is- Cell differentiation, Rcd1-like protein (TAIR-AT3G20800.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (311 aa)
     
 
  0.827
AT3G20800
Cell differentiation, Rcd1-like protein; Contains the following InterPro domains- Cell differentiation, Rcd1-like (InterPro-IPR007216); BEST Arabidopsis thaliana protein match is- Cell differentiation, Rcd1-like protein (TAIR-AT5G12980.1); Has 491 Blast hits to 488 proteins in 205 species- Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 135; Plants - 110; Viruses - 0; Other Eukaryotes - 86 (source- NCBI BLink) (316 aa)
     
 
  0.827
AT2G32550
Cell differentiation, Rcd1-like protein; Contains the following InterPro domains- Cell differentiation, Rcd1-like (InterPro-IPR007216); BEST Arabidopsis thaliana protein match is- Cell differentiation, Rcd1-like protein (TAIR-AT5G12980.1); Has 472 Blast hits to 471 proteins in 203 species- Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 133; Plants - 100; Viruses - 0; Other Eukaryotes - 83 (source- NCBI BLink) (322 aa)
     
 
  0.827
AT1G07705
NOT2 / NOT3 / NOT5 family; Its function is described as transcription regulator activity; Involved in regulation of transcription; Located in nucleus, chloroplast; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- NOT2/NOT3/NOT5 (InterPro-IPR007282); BEST Arabidopsis thaliana protein match is- VIRE2 interacting protein 2 (TAIR-AT5G59710.1); Has 3259 Blast hits to 2610 proteins in 429 species- Archae - 0; Bacteria - 983; Metazoa - 821; Fungi - 441; Plants - 185; Viruses - 8; Other Eukaryotes - 821 (source- NCBI BLink) (614 aa)
     
 
  0.801
AT1G07700
Thioredoxin-like 4, chloroplastic; Probable thiol-disulfide oxidoreductase that may participate in various redox reactions (217 aa)
     
 
  0.801
AT3G58580
Carbon catabolite repressor protein 4 homolog 2; Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover (603 aa)
     
 
  0.789
AT3G58560
Carbon catabolite repressor protein 4 homolog 1; Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover (602 aa)
     
 
  0.789
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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