STRINGSTRING
PUB45 protein (Arabidopsis thaliana) - STRING interaction network
"PUB45" - Plant U-box 45 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUB45Plant U-box 45; Functions as an E3 ubiquitin ligase (768 aa)    
Predicted Functional Partners:
RK3
Receptor kinase 3; Involved in the regulation of cellular expansion and differentiation (850 aa)
       
 
  0.722
SD2-5
S-domain-2 5 (821 aa)
     
   
  0.685
SD1-29
S-domain-1 29 (805 aa)
           
  0.677
AT2G41890
Curculin-like mannose-binding lectin fand PAN domain-containing protein (764 aa)
           
  0.672
RLK4
Receptor-like protein kinase 4; Serine/threonine-protein kinase (818 aa)
           
  0.634
AT4G27300
S-locus lectin protein kinase-like protein (815 aa)
           
  0.605
EMB1290
EMBRYO DEFECTIVE 1290 (1035 aa)
           
  0.603
SD1-13
S-domain-1 13; Receptor-like serine/threonine-protein kinase that represses the disease resistance signaling pathway triggered in response to bacterial pathogen such as Pseudomonas syringae pv. tomato (830 aa)
           
  0.600
UND
UNDEAD (389 aa)
           
  0.558
ATL43
RING-H2 finger protein ATL43 (353 aa)
           
  0.553
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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