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AT1G28060 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G28060" - Pre-mRNA-splicing factor 3 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G28060Pre-mRNA-splicing factor 3 (786 aa)    
Predicted Functional Partners:
EMB2770
EMBRYO DEFECTIVE 2770; Pre-mRNA splicing factor required for splicing and for the turnover of unstable transcripts. May be a U5 snRNP-associated protein involved in the formation of U4/U6-U5 tri-snRNP. Involved in responses to abiotic stresses. Involved in microRNAs (miRNAs) biogenesis by functioning in primary miRNAs (pri-miRNAs) splicing. Required for DNA methylation and transcriptional silencing through the RNA-directed DNA methylation (RdDM) pathway (1029 aa)
     
  0.998
AT1G10580
pre-mRNA-processing factor 17 (573 aa)
     
  0.997
At1g80070
ABNORMAL SUSPENSOR 2 (2359 aa)
     
  0.997
CDC5
Cell division cycle 5; Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence ’CTCAGCG’ binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage (844 aa)
     
  0.997
AT5G28740
pre-mRNA-splicing factor SYF1 (917 aa)
     
  0.997
LIS
LACHESIS (554 aa)
     
  0.997
EMB2765
EMBRYO DEFECTIVE 2765 (1509 aa)
     
    0.997
SKIP
Chromatin protein family; Splicing factor involved in post-transcriptional regulation of circadian clock and flowering time genes. Associates with the pre-mRNA of PRR7, PRR9, ELF3 and GI, and is necessary for the regulation of their alternative splicing and mRNA maturation. Probably involved in splice site recognition (613 aa)
     
  0.996
AT3G18790
pre-mRNA-splicing factor ISY1 (300 aa)
     
  0.996
AT2G05720
WD40 domain-containing protein (276 aa)
     
  0.996
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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