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AT1G28090 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G28090" - tRNA nucleotidyltransferase (CCA-adding enzyme) in Arabidopsis thaliana
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G28090tRNA nucleotidyltransferase (CCA-adding enzyme) (541 aa)    
Predicted Functional Partners:
AT3G26560
ATP-dependent RNA helicase, putative; May be involved in pre-mRNA splicing (1168 aa)
   
  0.979
RIF10
Resistant to inhibition with FSM 10; Involved in the metabolism of all major classes of plastid RNAs. Required for efficient 3’-end processing of mRNAs and 3’-end maturation of rRNA transcripts, but is not sufficient to mediate their degradation. Mediates tRNA degradation. May function as a poly(A) mRNA 3’-5’ degrading phosphorylase. May be required for plastid ribosome assembly and non-coding RNA biogenesis and accumulation. Seems not required for efficient translation (922 aa)
     
  0.860
AT5G14580
Polyribonucleotide nucleotidyltransferase; Involved in the 3’-end maturation of mitochondrial mRNAs, rRNAs and tRNAs. Functions as a poly(A) mRNA 3’-5’ degrading phosphorylase and is required for the degradation of highly expressed transcripts of non-coding regions (991 aa)
     
  0.858
EMB2763
EMBRYO DEFECTIVE 2763; Catalytic component of the RNA exosome complex which has 3’->5’ exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. Required for 5.8S rRNA intermediate processing and the degradation of 5’ external transcribed spacer (5’ ETS), a maturation by-product of rRNA synthesis. Is not involved in the degradation of turnip crinkle virus (TCV) RNA and significant virus resistance (PubMed-24244451). Required for normal development of female gametophytes and early embryogenesis (PubMed-20798041, PubMed-24244451) (1012 aa)
   
  0.807
EMB2730
EMBRYO DEFECTIVE 2730; 3’-5’ exoribonuclease that catalyzes 3’ maturation of chloroplast and mitochondrion ribosomal RNAs; degrades short nucleotidic extensions to generate the mature 3’-ends. Involved in the maturation of 23S, 16S and 5S rRNAs (803 aa)
   
  0.786
AT1G77680
Ribonuclease II/R-like protein; Probable inactive 3’-5’-exoribonuclease. Is unable to complement the growth defect of a yeast mutant lacking RRP44 exonuclease (PubMed-24244451) (1055 aa)
   
  0.786
RNEE/G
RNAse E/G-like; Involved in intercistronic processing of primary transcripts from chloroplast operons. The endonucleolytic activity of the enzyme depends on the number of phosphates at the 5’ end, is inhibited by structured RNA, and preferentially cleaves A/U- rich sequences (1001 aa)
     
  0.779
AT2G25100
Ribonuclease H2 subunit A; Catalytic subunit of RNase HII, an endonuclease that specifically degrades the RNA of RNA-DNA hybrids. Participates in DNA replication, possibly by mediating the removal of lagging- strand Okazaki fragment RNA primers during DNA replication. Mediates the excision of single ribonucleotides from DNA-RNA duplexes (By similarity) (296 aa)
   
 
  0.729
AT4G30000
Dihydropterin pyrophosphokinase / Dihydropteroate synthase; Catalyzes the first two consecutive steps of tetrahydrofolate biosynthesis (561 aa)
   
   
  0.723
NTRC
NADPH-dependent thioredoxin reductase 3; Thioredoxin reductase (TR) that exhibits both TR and thioredoxin (Trx) activities. Contains a C-terminal functional Trx domain. Functions as an electron donor for plastidial 2-Cys peroxiredoxins and participates in a NADPH-dependent hydrogen peroxide scavenging system in chloroplasts in the dark. Required for chlorophyll biosynthesis and biogenesis of the photosynthetic apparatus. Activates aerobic cyclase which converts Mg- protoporhyrin monomethyl ester into protochlorophyllide. Involved in a light-dependent regulation of starch biosynthesis b [...] (529 aa)
         
  0.708
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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