STRINGSTRING
AT1G28140 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G28140" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G28140Uncharacterized protein (280 aa)    
Predicted Functional Partners:
AT2G23780
Ubiquitin-protein ligase RNF5 (227 aa)
           
  0.738
AT1G28135
Uncharacterized protein (51 aa)
           
  0.738
AT1G55805
BolA-like-like protein; May act either alone or in interaction with glutaredoxin as a redox-regulated transcriptional regulator, or as a factor regulating Fe-S cluster biogenesis (Probable). The glutaredoxin- BOLA1 heterodimers bind a labile, oxygen sensitive iron-sulfur cluster (PubMed-24714563) (160 aa)
           
  0.737
AT1G52650
F-box/LRR-repeat protein (507 aa)
           
  0.733
MEE68
Homeobox protein 22; Essential protein. Putative transcription factor (220 aa)
           
  0.731
ARV1
Arv1-like protein (245 aa)
           
  0.673
TLP18.3
Thylakoid lumen protein 18.3 (285 aa)
   
        0.636
CSTF64
Cleavage stimulating factor 64; One of the multiple factors required for polyadenylation and 3’-end cleavage of pre-mRNAs (By similarity). This subunit is directly involved in the binding to pre-mRNAs, especially on the 3’ non-coding region (PubMed-12379796). Required for the targeted 3’ processing of antisense transcripts that triggers transcriptional silencing of the corresponding sense gene (PubMed-17008405, PubMed-19965720) (461 aa)
           
  0.633
AT1G22850
SNARE associated Golgi protein family (344 aa)
     
   
  0.631
AT1G55800
Uncharacterized protein (314 aa)
           
  0.608
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (9%) [HD]