• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G28306 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G28306" - Plant self-incompatibility protein S1 family in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G28306Plant self-incompatibility protein S1 family; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Contains the following InterPro domains- Plant self-incompatibility S1 (InterPro-IPR010264); BEST Arabidopsis thaliana protein match is- Plant self-incompatibility protein S1 family (TAIR-AT1G28305.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (137 aa)    
Predicted Functional Partners:
AT1G28305
Plant self-incompatibility protein S1 family; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Contains the following InterPro domains- Plant self-incompatibility S1 (InterPro-IPR010264); BEST Arabidopsis thaliana protein match is- Plant self-incompatibility protein S1 family (TAIR-AT1G28306.1); Has 197 Blast hits to 195 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 197; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (137 aa)
     
     
0.448
AT5G07420
Pectin lyase-like superfamily protein; Acts in the modification of cell walls via demethylesterification of cell wall pectin (361 aa)
     
        0.437
AT2G22807
Encodes a defensin-like (DEFL) family protein (93 aa)
     
        0.432
AT2G16535
Encodes a Maternally expressed gene (MEG) family protein (76 aa)
     
        0.431
RALFL30
Protein RALF-like 30; Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity) (76 aa)
     
        0.430
RALFL20
Protein RALF-like 20; Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity) (72 aa)
     
        0.430
EXPA24
Expansin-A24; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity) (296 aa)
     
        0.428
AT3G01250
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in 9 plant structures; Expressed during L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 50 Blast hits to 50 proteins in 23 species- Archae - 0; Bacteria - 28; Metazoa - 15; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink) (164 aa)
     
        0.428
AT5G44300
Dormancy/auxin associated family protein; Contains the following InterPro domains- Dormancyauxin associated (InterPro-IPR008406); BEST Arabidopsis thaliana protein match is- Dormancy/auxin associated family protein (TAIR-AT2G33830.2); Has 158 Blast hits to 158 proteins in 46 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink); Belongs to the DRM1/ARP family (114 aa)
     
        0.426
AT3G26860
Plant self-incompatibility protein S1 family; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in 9 plant structures; Expressed during L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Contains the following InterPro domains- Plant self-incompatibility S1 (InterPro-IPR010264); BEST Arabidopsis thaliana protein match is- Plant self-incompatibility protein S1 family (TAIR-AT3G27331.1); Has 30201 Blast hits to 17322 proteins in [...] (122 aa)
     
     
0.426
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]