STRINGSTRING
AT1G28395 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G28395" - Uncharacterized protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G28395Uncharacterized protein (95 aa)    
Predicted Functional Partners:
RPS28
Ribosomal protein S28 (64 aa)
     
        0.852
ROC2
Rotamase cyclophilin 2; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (176 aa)
     
        0.848
AT3G06680
60S ribosomal protein L29-2 (83 aa)
     
        0.844
AT4G12600
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (183 aa)
     
        0.840
AT1G07070
60S ribosomal protein L35a-1 (112 aa)
     
        0.836
AT3G44590
60S acidic ribosomal protein P2-4; Plays an important role in the elongation step of protein synthesis (111 aa)
     
        0.824
AT5G61170
40S ribosomal protein S19-3 (143 aa)
     
        0.823
HDA3
Histone deacetylase 3; Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Required for histone H3 ’Lys-9’ deacetylation. Involved in rRNA gene silencing in nucleolar dominance. Seems to be implicated in the regulation of genes involved in seeds development (245 aa)
     
        0.820
AT3G16080
60S ribosomal protein L37-3; Binds to the 23S rRNA (95 aa)
     
        0.819
AT2G37600
60S ribosomal protein L36-1 (113 aa)
     
        0.818
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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