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AT1G28540 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G28540" - Unknown protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G28540Unknown protein; Has 25 Blast hits to 25 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (103 aa)    
Predicted Functional Partners:
AT1G28530
Uncharacterized protein At1g28530; Unknown protein; Involved in biological_process unknown; Located in chloroplast; Expressed in 19 plant structures; Expressed during 10 growth stages; Has 20 Blast hits to 20 proteins in 6 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (614 aa)
           
  0.766
GDC1
Protein LHCP TRANSLOCATION DEFECT; Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway (175 aa)
           
  0.559
SARA1A
Secretion-associated RAS super family 1; A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases; Belongs to the small GTPase superfamily. SAR1 family (193 aa)
           
  0.553
EMB269
GTP-binding protein OBGC, chloroplastic; GTP-binding protein involved in membrane biogenesis and protein synthesis in chloroplast. Functions in the biogenesis of thylakoid membrane and plastid ribosome during chloroplast development. May be involved in the vesicular traffic between the chloroplast inner envelope membrane and thylakoids. Possesses GTPase activity in vitro (681 aa)
           
  0.550
AT4G01150
Protein CURVATURE THYLAKOID 1A, chloroplastic; Determines thylakoid architecture by inducing membrane curvature (164 aa)
           
  0.550
PTAC14
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14; Essential for chloroplast development, especially for thylakoid formation. Involved in plastid gene expression, probably by maintaining plastid-encoded RNA polymerase (PEP) activity; Belongs to the class V-like SAM-binding methyltransferase superfamily (483 aa)
           
  0.465
PAC1
Proteasome subunit alpha type-4-A; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (250 aa)
           
  0.463
SAR1B
Secretion-associated RAS 1B; Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins. A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. The protein is found associated to the ER and free in the cytosol (193 aa)
           
  0.463
ALE1
PA-domain containing subtilase family protein; Serine protease required for epidermal surface formation in embryos and juvenile plants. Involved in embryonic cuticle formation downstream of BHLH95/ZOU; Belongs to the peptidase S8 family (832 aa)
           
  0.410
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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