STRINGSTRING
AT1G28540 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G28540" - Uncharacterized protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G28540Uncharacterized protein (103 aa)    
Predicted Functional Partners:
AT1G28530
Uncharacterized protein (614 aa)
           
  0.861
GDC1
Ankyrin repeat family protein; Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway (175 aa)
           
  0.636
EMB269
EMBRYO DEFECTIVE 269; GTP-binding protein involved in membrane biogenesis and protein synthesis in chloroplast. Functions in the biogenesis of thylakoid membrane and plastid ribosome during chloroplast development. May be involved in the vesicular traffic between the chloroplast inner envelope membrane and thylakoids. Possesses GTPase activity in vitro (681 aa)
           
  0.633
AT4G01150
Uncharacterized protein; Determines thylakoid architecture by inducing membrane curvature (164 aa)
           
  0.632
PTAC14
Plastid transcriptionally active 14; Essential for chloroplast development, especially for thylakoid formation. Involved in plastid gene expression, probably by maintaining plastid-encoded RNA polymerase (PEP) activity (483 aa)
           
  0.507
ALE1
ABNORMAL LEAF-SHAPE 1; Serine protease required for epidermal surface formation in embryos and juvenile plants (832 aa)
           
  0.474
SCO2
SNOWY COTYLEDON 2; Protein disulfide-isomerase involved in chloroplast development in cotyledons. Involved in the process of vesicle- derived thylakoid formation, probably at the level of the integration and folding of LHCB proteins at the initial location of integration. Acts only in germinating seeds after dormancy, during the transition from heterotrophic to autotrophic growth (187 aa)
           
  0.450
PAC1
20S proteasome alpha subunit C1; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (250 aa)
           
  0.448
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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