STRINGSTRING
AT1G28630 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G28630" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G28630Uncharacterized protein (563 aa)    
Predicted Functional Partners:
PKR2
PICKLE RELATED 2; Chromatin remodeling factor that represses the expression of embryonic trait genes upon and after seed germination and thus enables the developmental switch to post- germinative growth (1202 aa)
     
        0.436
HDG9
Homeodomain GLABROUS 9; Probable transcription factor that binds to the DNA sequence 5’-GCATTAAATGCGCA-3’ (718 aa)
     
        0.435
LRB3
Light-response BTB 3; May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (505 aa)
     
        0.435
HDG3
Homeodomain GLABROUS 3; Probable transcription factor (725 aa)
     
        0.435
NIP1
NEP-interacting protein 1 (396 aa)
     
        0.435
AT2G04750
Actin binding calponin homology domain-containing protein; Cross-links actin filaments (F-actin). Stabilizes and prevents F-actin depolymerization mediated by profilin. May regulate actin cytoarchitecture, cell cycle, cell division, cell elongation and cytoplasmic tractus (652 aa)
     
        0.428
AT5G37560
RING/U-box superfamily protein (444 aa)
     
        0.426
AT1G11070
Uncharacterized protein (763 aa)
     
        0.426
AT3G50730
Putative protein kinase (371 aa)
     
        0.415
PPI3A
Uncharacterized protein; May regulate plasma membrane ATPase activity (576 aa)
     
        0.414
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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