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AT1G28640 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G28640" - GDSL-like Lipase/Acylhydrolase superfamily protein in Arabidopsis thaliana
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
protein homology
Your Input:
Gene Fusion
AT1G28640GDSL-like Lipase/Acylhydrolase superfamily protein; Its function is described as lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; Involved in glycerol biosynthetic process, lipid metabolic process; Located in endomembrane system; Contains the following InterPro domains- Lipase, GDSL (InterPro-IPR001087); BEST Arabidopsis thaliana protein match is- GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR-AT1G28670.1); Has 3448 Blast hits to 3401 proteins in 207 species- Archae - 0; Bacteria - 321; Metazoa - 0; Fungi - 6; Plants - 3118; Viruses - 0; [...] (389 aa)    
Predicted Functional Partners:
Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation (380 aa)
Transmembrane magnesium transporter. One of nine family members; Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35.5) family (484 aa)
ER membrane protein complex subunit-like protein; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endoplasmic reticulum, plasma membrane; Expressed in 24 plant structures; Expressed during 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (292 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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