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AT1G29040 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G29040" - Uncharacterized protein At1g29040 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G29040Uncharacterized protein At1g29040; Unknown protein; Located in chloroplast, vacuole; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Conserved hypothetical protein CHP02058 (InterPro-IPR011719); Has 344 Blast hits to 344 proteins in 122 species- Archae - 2; Bacteria - 227; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 83 (source- NCBI BLink) (198 aa)    
Predicted Functional Partners:
AT5G05210
Surfeit locus protein 6; Contains the following InterPro domains- Surfeit locus 6 (InterPro-IPR007019); BEST Arabidopsis thaliana protein match is- Surfeit locus protein 6 (TAIR-AT2G27750.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (386 aa)
       
      0.562
AtPOT1a
Nucleic acid-binding, OB-fold-like protein; Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature- different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b; Belongs to the telombin family (467 aa)
       
      0.562
AT1G29041
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Has 4 Blast hits to 4 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (178 aa)
 
            0.463
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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