• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G29220 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G29220" - Transcriptional regulator family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G29220Transcriptional regulator family protein; Its function is described as transcription regulator activity; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- HCNGP-like (InterPro-IPR012479) (363 aa)    
Predicted Functional Partners:
YLS8
mRNA splicing factor, thioredoxin-like U5 snRNP; Encodes Dim1 homolog; Belongs to the DIM1 family (142 aa)
     
        0.864
AT3G24730
mRNA splicing factor, thioredoxin-like U5 snRNP; Its function is described as catalytic activity; Involved in mitosis; Located in spliceosomal complex; Contains the following InterPro domains- Thioredoxin fold (InterPro-IPR012335), mRNA splicing factor, thioredoxin-like U5 snRNP (InterPro-IPR004123), Thioredoxin-like fold (InterPro-IPR012336); BEST Arabidopsis thaliana protein match is- mRNA splicing factor, thioredoxin-like U5 snRNP (TAIR-AT5G08290.1); Has 535 Blast hits to 535 proteins in 209 species- Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 146; Plants - 109; Viruses - 0; Ot [...] (159 aa)
     
        0.864
THO1
Nuclear matrix protein-related; Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export. Contributes to the integrity of the endogenous trans-acting small interfering RNA (ta-siRNA) pathway. May process or transport a long RNA molecule so that it can be a template for secondary siRNA production. May participate in the trafficking of siRNA precursors to the ARGONAUTE catalytic center. Required for the generation of functional messenger ribonucleoproteins (mRNPs). Plays an important roles in plant innate immunity (599 aa)
     
      0.810
DDB1B
Damaged DNA binding protein 1B; One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase (1088 aa)
       
      0.741
DDB1A
Damaged DNA binding protein 1A; Component of light signal transduction machinery. Involved in repression of photomorphogenesis in darkness by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes (E2s). Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis- promoting factors such as HY5, HYH and LAF1. Plays a role in DNA repair by forming with DDB2 the UV-damaged DNA-binding protein complex (UV-DDB). Component of the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-prote [...] (1088 aa)
       
      0.741
AT2G32600
Hydroxyproline-rich glycoprotein family protein; Its function is described as zinc ion binding, nucleic acid binding; Involved in biological_process unknown; Located in nucleus, intracellular, spliceosomal complex; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Zinc finger, C2H2-like (InterPro-IPR015880), Zinc finger, U1-type (InterPro-IPR003604), Zinc finger, C2H2-type matrin (InterPro-IPR000690); Has 18078 Blast hits to 8181 proteins in 576 species- Archae - 26; Bacteria - 1885; Metazoa - 7255; Fungi - 1800; Plants - 3678 [...] (277 aa)
       
      0.733
NF-YB11
Putative CCAAT-binding transcription factor subunit; "nuclear factor Y, subunit B11" (NF-YB11); Its function is described as sequence-specific DNA binding transcription factor activity; Involved in regulation of transcription; Located in intracellular; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Transcription factor CBF/NF-Y/archaeal histone (InterPro-IPR003958), Histone-fold (InterPro-IPR009072); BEST Arabidopsis thaliana protein match is- nuclear factor Y, subunit B1 (TAIR-AT2G38880.7); Has 148542 Blast hits to 60498 p [...] (275 aa)
     
        0.729
BGAL3
Putative beta-galactosidase (BGAL3 gene); Belongs to the glycosyl hydrolase 35 family (856 aa)
           
  0.692
AT4G31040
CemA-like proton extrusion protein-related; Involved in biological_process unknown; Located in integral to membrane, chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- CemA (InterPro-IPR004282); BEST Arabidopsis thaliana protein match is- CemA-like proton extrusion protein-related (TAIR-ATCG00530.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (438 aa)
           
  0.611
WRKY35
Probable WRKY transcription factor 35; Transcription factor. Interacts specifically with the W box (5’-(T)TGAC[CT]-3’), a frequently occurring elicitor- responsive cis-acting element (By similarity) (427 aa)
           
  0.579
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (6%) [HD]