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AT1G29250 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G29250" - Alba DNA/RNA-binding protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
AT1G29250Alba DNA/RNA-binding protein; Its function is described as nucleic acid binding; Involved in biological_process unknown; Located in plasma membrane, nucleus; Expressed in 23 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Alba, DNA/RNA-binding protein (InterPro-IPR002775), Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro-IPR014560); BEST Arabidopsis thaliana protein match is- Alba DNA/RNA-binding protein (TAIR-AT2G34160.1); Has 157 Blast hits to 157 proteins in 32 species- Archae - 0; Bacteria - 0; Metazoa [...] (130 aa)    
Predicted Functional Partners:
AT5G60670
Ribosomal protein L11 family protein; Binds directly to 26S ribosomal RNA (166 aa)
     
        0.867
AT2G20450
Ribosomal protein L14; Its function is described as structural constituent of ribosome; Involved in translation, ribosome biogenesis; Located in ribosome, cytosolic large ribosomal subunit, endoplasmic reticulum, vacuole; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L14 (InterPro-IPR002784); BEST Arabidopsis thaliana protein match is- Ribosomal protein L14 (TAIR-AT4G27090.1); Has 732 Blast hits to 732 proteins in 320 species- Archae - 80; Bacteria - 0; Metazoa - 273; Fungi - 143; Plants - 110; Viruses - [...] (134 aa)
     
        0.863
AT2G32060
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic small ribosomal subunit, cytosolic ribosome, nucleus; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein S12e (InterPro-IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro-IPR004038); BEST Arabidopsis thaliana protein match is- Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR-AT1G15930.1); Has 949 Blast hits to 949 proteins [...] (144 aa)
     
        0.863
AT3G16080
Zinc-binding ribosomal protein family protein; Binds to the 23S rRNA (95 aa)
     
        0.860
AT4G10450
Ribosomal protein L6 family; Its function is described as structural constituent of ribosome, rRNA binding; Involved in translation; Located in cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L6 (InterPro-IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro-IPR020040), Ribosomal protein L6, conserved site-2 (InterPro-IPR002359); BEST Arabidopsis thaliana protein match is- Ribosomal protein L6 family (TAIR-AT1G33140.1); [...] (194 aa)
     
        0.856
AT3G47370
Ribosomal protein S10p/S20e family protein; Its function is described as structural constituent of ribosome, RNA binding; Involved in translation; Located in 6 components; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein S10, conserved site (InterPro-IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro-IPR005729), Ribosomal protein S10 (InterPro-IPR001848); BEST Arabidopsis thaliana protein match is- Ribosomal protein S10p/S20e family protein (TAIR-AT5G62300.2); Has 7480 Blast hits to 7480 protei [...] (122 aa)
     
        0.854
AT1G34030.1
Ribosomal protein S13/S18 family; Its function is described as structural constituent of ribosome, protein binding; Involved in translation; Located in 6 components; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein S13-like, H2TH (InterPro-IPR010979), Ribosomal protein S13, conserved site (InterPro-IPR018269), Ribosomal protein S13 (InterPro-IPR001892); BEST Arabidopsis thaliana protein match is- S18 ribosomal protein (TAIR-AT4G09800.1); Has 7956 Blast hits to 7953 proteins in 2911 species- Archae - 236; Bac [...] (152 aa)
     
        0.854
AT3G23390.1
Zinc-binding ribosomal protein family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, cytosolic large ribosomal subunit; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Ribosomal protein L44e (InterPro-IPR000552), Ribosomal protein, zinc-binding domain (InterPro-IPR011332); BEST Arabidopsis thaliana protein match is- Zinc-binding ribosomal protein family protein (TAIR-AT4G14320.1); Has 1023 Blast hits to 1019 proteins in 360 species- Archae - 169; Bacter [...] (105 aa)
     
        0.854
ROC2
Peptidyl-prolyl cis-trans isomerase CYP19-3; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family (176 aa)
     
        0.853
AT4G12600
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Its function is described as RNA binding; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (InterPro-IPR002415), Ribosomal protein L7Ae/L8/Nhp2 family (InterPro-IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro-IPR004038); BEST Arabidopsis thaliana protein match is- Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR-AT5G20160.2) (183 aa)
     
        0.850
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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