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AT1G29250 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G29250" - Alba DNA/RNA-binding protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G29250Alba DNA/RNA-binding protein (130 aa)    
Predicted Functional Partners:
AT4G12600
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (183 aa)
     
   
  0.855
AT2G32060
40S ribosomal protein S12-2 (144 aa)
     
   
  0.855
AT4G10450
60S ribosomal protein L9-2 (194 aa)
     
        0.853
ROC2
Rotamase cyclophilin 2; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (176 aa)
     
        0.853
RPL23AB
Ribosomal protein L23AB; Binds to a specific region on the 26S rRNA (154 aa)
     
        0.853
AT3G44590
60S acidic ribosomal protein P2-4; Plays an important role in the elongation step of protein synthesis (111 aa)
     
        0.853
AT3G23390
60S ribosomal protein L36a (105 aa)
     
        0.853
AT5G22440
60S ribosomal protein L10a-3 (217 aa)
     
        0.852
RACK1B_AT
Receptor for activated C kinase 1B; Minor component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes (PubMed-18947417). MAPK cascade scaffolding protein involved in the protease IV and ArgC signaling pathway but not the flg22 pathway (PubMed-25731164) (326 aa)
     
        0.851
AT4G15000
60S ribosomal protein L27-3 (135 aa)
     
        0.851
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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