STRINGSTRING
PUB17 protein (Arabidopsis thaliana) - STRING interaction network
"PUB17" - Plant U-box 17 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUB17Plant U-box 17; Functions as an E3 ubiquitin ligase (729 aa)    
Predicted Functional Partners:
CF9
Encodes CF9 (381 aa)
           
  0.676
UBA1
Ubiquitin-activating enzyme 1; Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding a ubiquitin- E1 thioester and free AMP (1080 aa)
           
  0.638
EXO70B2
Exocyst complex component 7 (599 aa)
     
   
  0.608
AT2G25910
3’-5’ exonuclease and KH-I domain-containing protein (342 aa)
           
  0.608
RIN2
RPM1 interacting protein 2; E3 ubiquitin protein ligase that acts as positive regulator of RPM1- and RPS2-dependent hypersensitive response (HR), in association with RIN3. Probably not required for RPM1 degradation during HR (578 aa)
           
  0.606
LOJ
LATERAL ORGAN JUNCTION; Involved in lateral organ development and boundary demarcation (867 aa)
           
  0.603
CMPG1
CYS, MET, PRO, and GLY protein 1; Functions as an E3 ubiquitin ligase (431 aa)
     
   
0.578
CPK32
Calcium-dependent protein kinase 32; May play a role in signal transduction pathways that involve calcium as a second messenger. Functions as regulator of the calcium-mediated abscisic acid (ABA) signaling pathway. Phosphorylates ABA-responsive transcription factor ABF4 in vitro (538 aa)
     
        0.559
RDUF1
C3H4 type zinc finger protein (395 aa)
     
   
  0.558
RIN3
RPM1 interacting protein 3; E3 ubiquitin protein ligase that acts as positive regulator of RPM1- and RPS2-dependent hypersensitive response (HR), in association with RIN2. Probably not required for RPM1 degradation during HR (595 aa)
           
  0.558
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (15%) [HD]