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AT1G29370 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G29370" - RNA polymerase II degradation factor-like protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
protein homology
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Gene Fusion
AT1G29370RNA polymerase II degradation factor-like protein (DUF1296); Kinase-related protein of unknown function (DUF1296); Contains the following InterPro domains- Protein of unknown function DUF1296 (InterPro-IPR009719); BEST Arabidopsis thaliana protein match is- Kinase-related protein of unknown function (DUF1296) (TAIR-AT1G29350.1); Has 14234 Blast hits to 8102 proteins in 480 species- Archae - 0; Bacteria - 599; Metazoa - 5712; Fungi - 1715; Plants - 1064; Viruses - 60; Other Eukaryotes - 5084 (source- NCBI BLink) (831 aa)    
Predicted Functional Partners:
Pyridoxal 5’-phosphate synthase PDX1-like 4; Putative PDX1-like protein 4 (PDX1L4); Involved in response to ethylene stimulus, pyridoxal phosphate biosynthetic process, response to stress; Located in plasma membrane; Expressed in ovule, male gametophyte, cultured cell; Expressed during M germinated pollen stage; Contains the following InterPro domains- Vitamin B6 biosynthesis protein (InterPro-IPR001852); BEST Arabidopsis thaliana protein match is- pyridoxine biosynthesis 1.1 (TAIR-AT2G38230.1); Has 2527 Blast hits to 2526 proteins in 1015 species- Archae - 229; Bacteria - 1613; Metazo [...] (79 aa)
Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain; Its function is described as protein serine/threonine/tyrosine kinase activity, protein kinase activity; Involved in protein amino acid phosphorylation; Located in cytosol; Expressed in male gametophyte, pollen tube; Expressed during L mature pollen stage, M germinated pollen stage; Contains the following InterPro domains- Octicosapeptide/Phox/Bem1p (InterPro-IPR000270), Protein kinase, ATP binding site (InterPro-IPR017441), Protein kinase, catalytic domain (InterPro-IPR000719), Serine-threonine/tyrosine-protein [...] (1248 aa)
Pyridoxal 5’-phosphate synthase subunit PDX1.1; Catalyzes the formation of pyridoxal 5’-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by PDX2. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Also plays an indirect role in resistance to singlet oxygen- generating photosensitizers (309 aa)
Tetratricopeptide repeat (TPR)-like superfamily protein; Located in chloroplast; Expressed in 9 plant structures; Expressed during 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT5G09950.1); Has 55398 Blast hits to 13784 proteins in 253 species- Archae - 0; Bacteria - 15; Metazoa - 97; Fungi - 52; Plants - 54672; Viru [...] (990 aa)
Calcium-dependent protein kinase 21; May play a role in signal transduction pathways that involve calcium as a second messenger. Mediates the phosphorylation and activation of the S-type anion efflux channel SLAC1 (531 aa)
Disease resistance protein (CC-NBS-LRR class) family; Probable disease resistance protein (888 aa)
Phosphotyrosine protein phosphatases superfamily protein; May possess phosphatase activity (337 aa)
U-box domain-containing protein kinase family protein; Functions as an E3 ubiquitin ligase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family (834 aa)
Zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein; Its function is described as zinc ion binding, nucleic acid binding; Involved in biological_process unknown; Located in intracellular; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Zinc finger, CCCH-type (InterPro-IPR000571), D111/G-patch (InterPro-IPR000467); Has 706 Blast hits to 687 proteins in 197 species- Archae - 0; Bacteria - 4; Metazoa - 400; Fungi - 113; Plants - 123; Viruses - 0; Other Eukaryotes - 66 (source- NCBI BLink) (497 aa)
RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5 (885 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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