STRINGSTRING
AT1G29370 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G29370" - Kinase-related protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G29370Kinase-related protein (831 aa)    
Predicted Functional Partners:
AT4G33170
Pentatricopeptide repeat-containing protein (990 aa)
     
   
  0.700
CTC1
CST complex subunit CTC1; Component of the CST complex, a complex that binds to single-stranded DNA and is required to protect telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves (PubMed-19854131). Associates with enzymatically active telomerase (PubMed-25329641) (1274 aa)
     
   
  0.680
STN1
CST complex subunit STN1; Component of the CST complex, a complex that binds to single-stranded DNA and is required to protect telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves (PubMed-19064932). Associates with enzymatically active telomerase (PubMed-25329641). Plays a genomewide role in DNA replication and facilitates re- replication at non-telomeric loci (PubMed-25299252) (160 aa)
           
  0.670
ATLIG4
DNA ligase 4; Efficiently joins single-strand breaks in a double- stranded polydeoxynucleotide in an ATP-dependent reaction. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break repair. May be involved for T-DNA integration even if not absolutely required. Seems to be dispensable under normal growth conditions (1219 aa)
     
   
  0.629
MDO1
Uncharacterized protein; Required for the maintenance of meristems and stem cells through the reduction of DNA damage (PubMed-21781195). Promotes telomere integrity by maintaining telomere length and proper architecture of the chromosome terminus (PubMed-23572541). Negatively regulates telomerase repeat addition processivity (PubMed-23572541). Hampers contacts between enzymatically active telomerase and CST complex (PubMed-25329641) (127 aa)
           
  0.603
AT1G47530
MATE efflux family protein (484 aa)
           
  0.594
PP2-B11
Phloem protein 2-B11; Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (257 aa)
           
  0.558
AT4G18380
F-box protein (380 aa)
           
  0.557
AT2G35680
Phosphotyrosine protein phosphatase-like protein; May possess phosphatase activity (337 aa)
           
  0.557
PDX1L4
Putative PDX1-like protein 4 (79 aa)
           
  0.554
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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