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AT1G29730 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G29730" - Leucine-rich repeat transmembrane protein kinase in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G29730Leucine-rich repeat transmembrane protein kinase (969 aa)    
Predicted Functional Partners:
AT3G26560
ATP-dependent RNA helicase, putative; May be involved in pre-mRNA splicing (1168 aa)
       
 
  0.689
AT3G24530
AAA-type ATPase family protein / ankyrin repeat family protein (481 aa)
       
 
  0.664
At5g47320
Ribosomal protein S19; The RNA-binding domain found in RPS19 may functionally replaces the missing mitochondrial RPS13 (212 aa)
       
  0.639
AT1G02080
Transcription regulators (2431 aa)
     
 
  0.626
U1A
Spliceosomal protein U1A; Involved in nuclear pre-mRNA splicing (By similarity). Seems to not be involved in polyadenylation (250 aa)
     
  0.620
U2B'
U2 small nuclear ribonucleoprotein B; Involved in nuclear pre-mRNA splicing (232 aa)
     
  0.620
AT1G06960
RNA recognition motif-containing protein; Involved in nuclear pre-mRNA splicing (229 aa)
     
  0.620
AT1G51840
Protein kinase-related (180 aa)
           
  0.603
AT1G10580
pre-mRNA-processing factor 17 (573 aa)
       
      0.603
AT1G08050
C3HC4-type RING finger-containing protein (641 aa)
     
   
  0.602
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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