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AT1G29850 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G29850" - Double-stranded DNA-binding-like protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G29850Double-stranded DNA-binding-like protein (151 aa)    
Predicted Functional Partners:
AT4G30000
Dihydropterin pyrophosphokinase / Dihydropteroate synthase; Catalyzes the first two consecutive steps of tetrahydrofolate biosynthesis (561 aa)
       
      0.924
AT1G69190
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/dihydropteroate synthase; Catalyzes the first two consecutive steps of tetrahydrofolate biosynthesis (PubMed-17289662). Plays a role in seed stress response and survival (PubMed-17289662, PubMed-21996493) (484 aa)
       
      0.924
PFD5
Prefoldin 5; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (By similarity) (151 aa)
   
 
  0.737
AT3G54470
Orotidine 5’-phosphate decarboxylase (476 aa)
       
      0.595
AT2G19740
60S ribosomal protein L31-1 (119 aa)
   
        0.576
AT5G56710
60S ribosomal protein L31-3 (119 aa)
   
        0.550
AT4G26230
60S ribosomal protein L31-2 (119 aa)
   
        0.546
AT3G23390
60S ribosomal protein L36a (105 aa)
   
        0.534
AT4G14320.2
60S ribosomal protein L36a (154 aa)
   
        0.529
AT5G15520
40S ribosomal protein S19-2 (143 aa)
   
        0.496
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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